BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0245.p (382 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982285|ref|YP_001352393.1| diguanylate cyclase [Janthinoba... 100 1e-22 gi|152981463|ref|YP_001352343.1| signal transduction protein [Ja... 99 3e-22 gi|152980873|ref|YP_001353831.1| hypothetical protein mma_2141 [... 97 1e-21 gi|152983039|ref|YP_001352601.1| sensory box protein [Janthinoba... 95 9e-21 gi|152982088|ref|YP_001354597.1| hypothetical protein mma_2907 [... 93 2e-20 >gi|152982285|ref|YP_001352393.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 300 Score = 100 bits (250), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/253 (30%), Positives = 123/253 (48%), Gaps = 13/253 (5%) Query: 133 SSLLRPHGAS---LSVGAAQLRHVLLVHGLFYVAKAVSALALGAWVDLAAFGGTIIQVS- 188 S +++P A+ + A L+V + V L D F G I +S Sbjct: 51 SDVVKPEKANWFLEQIARALESRKLVVEEYELSNRDVKGLDDDGPKDPIWFEGRIQALSF 110 Query: 189 LIEGSMAVMLIALSMTGTERQRREERIGQLAARDPLTGLLNRRALHA----RAPALLAQA 244 L++ V+ +A +++ ER E ++ +L+ D LTGL NRR L +LL + Sbjct: 111 LVDDEEVVLWVASNIS--ERHILEGKLRELSDTDQLTGLFNRRKLEHDLTLHYESLLRYS 168 Query: 245 SAQHPTALLLIDIDNFKQVNDLHGHAAGDKLLEALSTLLRESLPEHALAARLGGDEFVIL 304 PT++ + D+DN K++ND GH AGD++++A++ + R ++ + A R GGDEFVI Sbjct: 169 V---PTSVFIFDLDNLKKINDTKGHHAGDEIIQAVADICRSAIRKADTACRFGGDEFVIA 225 Query: 305 LQDVRAEELMRSLEELRQAFSLMARNMFATPDVVSLSTGASLVEVPPLDLDSVIAITDAA 364 L + E+ M+ E L F VV+ S G + + + + D A Sbjct: 226 LPNTELEQAMQLAERLHDRFRKELSRFSVGDTVVTASIGVTSMVPEDRSYEDTLKRADRA 285 Query: 365 LYEAKRKGRDRVV 377 LYEAK G+DR+V Sbjct: 286 LYEAKSMGKDRIV 298 >gi|152981463|ref|YP_001352343.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 457 Score = 99.4 bits (246), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 66/196 (33%), Positives = 108/196 (55%), Gaps = 16/196 (8%) Query: 190 IEGSMAVMLIALSMTGTERQRREERIGQLAARDPLTGLLNRRALHARAPALLAQASAQHP 249 I GS+ V +A + G R R+E + +LA D LTGL NRR L +R +A A+ H Sbjct: 269 ILGSLFVAWLAYLLGGVIRSRKE--LQRLAQYDVLTGLPNRRLLDSRLKKAIAGANGHHH 326 Query: 250 -TALLLIDIDNFKQVNDLHGHAAGDKLLEALSTLLRESLPEHALAARLGGDEFVILLQDV 308 A+ +D+D FK+VND GHAAGD+LL+ ++ L+ + AR GGDEFV++L Sbjct: 327 LVAVCFLDLDGFKEVNDSLGHAAGDRLLQQMAQRLQHCMRATDTLARFGGDEFVVIL--- 383 Query: 309 RAEELMRSLEELRQAFSLMAR------NMFATPDVVSLSTGASLVEVPPLDLDSVIAITD 362 + + S++E + M +M +VS S G ++ + P ++ + ++ D Sbjct: 384 ---DRLNSIDECEKILERMIHTAQEPVHMDGNEVIVSASIGVAMFQ-PGVEREQLLKRAD 439 Query: 363 AALYEAKRKGRDRVVM 378 A+Y+AK+ G+++ V Sbjct: 440 TAMYQAKQLGKNKYVF 455 >gi|152980873|ref|YP_001353831.1| hypothetical protein mma_2141 [Janthinobacterium sp. Marseille] Length = 934 Score = 97.4 bits (241), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 67/174 (38%), Positives = 94/174 (54%), Gaps = 11/174 (6%) Query: 214 RIGQLAARDPLTGLLNRRALHAR---APALLAQASAQHPTALLLIDIDNFKQVNDLHGHA 270 ++ AA DPLTGL NRR R A LA S QH ALL +D+D FK VND GH+ Sbjct: 501 QLSHQAAHDPLTGLFNRREFERRLEVAIDTLALQSKQH--ALLYLDLDQFKIVNDTCGHS 558 Query: 271 AGDKLLEALSTLLRESLPEHALAARLGGDEFVILLQDVRAEELMRSLEELRQA---FSLM 327 AGD+LL ++ LL+ + + ARLGGDEF L++ + +R E+LRQ F + Sbjct: 559 AGDELLRQITALLQPLVRDSDTLARLGGDEFGAFLENCTPDSAVRIAEKLRQTICDFHFV 618 Query: 328 ARNMFATPDVVSLSTGASLVEVPPLDLDSVIAITDAALYEAKRKGRDRVVMTRS 381 ++ + +S G L L +++ DAA Y AK GR+RV + R+ Sbjct: 619 WQDKIFP---IGVSIGLVNFNSDALSLPDLLSAADAACYVAKDTGRNRVHIYRA 669 >gi|152983039|ref|YP_001352601.1| sensory box protein [Janthinobacterium sp. Marseille] Length = 914 Score = 94.7 bits (234), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 119/242 (49%), Gaps = 22/242 (9%) Query: 148 AQLRHVLLVHGLFYVAKAVSALAL--GAWVD---LAAFGGTIIQVSLI--EGSMAVMLIA 200 QL V + G Y S +A+ G + D + A I ++ E +AV Sbjct: 408 TQLSTVEFIRGYLYTLMQQSRIAMEKGFYEDDFEMQAHNQGWIHKRMLRCEDGLAVTFRD 467 Query: 201 LSMTGTERQRREERIGQLAARDPLTGLLNRRALHARAPALLAQASAQHPT-ALLLIDIDN 259 +S +R+ EE + +LA +D LT L NR L P L +A+ + + A+L ID+D+ Sbjct: 468 VS----DRKAHEEELHRLATKDTLTNLPNRYWLMNHLPKALNEANEKQDSLAVLFIDLDD 523 Query: 260 FKQVNDLHGHAAGDKLLEALSTLLRESLPEHALAARLGGDEFVILLQDVRAEELM----- 314 FK +ND GH++GD LL+ +++ L L RLGGDEF +LL+ + +E + Sbjct: 524 FKNINDTLGHSSGDSLLQVVASRLESVLRPGDSVVRLGGDEFTLLLESLPLQEDISLIAN 583 Query: 315 RSLEELRQAFSLMARNMFATPDVVSLSTGASLVEVPPLDLDSVIAITDAALYEAKRKGRD 374 R ++ Q F + + + +S S G S D ++++ D A+Y AK G++ Sbjct: 584 RIMQTFNQPFEIQQKML-----TISASMGISRYPFDGRDAETLLKNADIAMYSAKADGKN 638 Query: 375 RV 376 +V Sbjct: 639 KV 640 >gi|152982088|ref|YP_001354597.1| hypothetical protein mma_2907 [Janthinobacterium sp. Marseille] Length = 719 Score = 93.2 bits (230), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 71/200 (35%), Positives = 108/200 (54%), Gaps = 16/200 (8%) Query: 187 VSLIEGSMAVMLIALSMTGTERQRREERIGQLAARDPLTGLLNRRALHARAPALLAQASA 246 V+ + + IA TER+ + + +A +DPLT L NRRAL R P +A+A+ Sbjct: 525 VACVARRNGYLFIAFLHDITERKLLQASLMGMALKDPLTDLPNRRALIQRLPESIARAAR 584 Query: 247 -QHPTALLLIDIDNFKQVNDLHGHAAGDKLLEALSTLLRESLPEHALAARLGGDEFVILL 305 P A+L +D+D FK VND +GH AGD+LL ++ L ++ ARL GDEFVI+L Sbjct: 585 LGKPLAVLFLDLDGFKGVNDGYGHEAGDELLRTIAQRLLGAVRTTDTVARLAGDEFVIVL 644 Query: 306 Q----DVRAEELM-RSLEELRQAFSLMARNMFATPDVVSLSTGASLVEVPPLD---LDSV 357 + D A ++ + L L+Q F+L A V++S + P D + + Sbjct: 645 EMLNGDSDAMDVADKILHTLQQPFTLTAA-------TVTISASIGIAMHWPEDHTTPEQL 697 Query: 358 IAITDAALYEAKRKGRDRVV 377 I + D A+Y AK+KG++R V Sbjct: 698 ITLADGAMYAAKKKGKNRAV 717 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.325 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 676,418 Number of extensions: 23419 Number of successful extensions: 183 Number of sequences better than 1.0e-08: 30 Number of HSP's gapped: 155 Number of HSP's successfully gapped: 30 Length of query: 382 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 297 Effective length of database: 906,776 Effective search space: 269312472 Effective search space used: 269312472 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)