BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0238.p
         (167 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980927|ref|YP_001351836.1| Lpr family transcriptional regu...   104   2e-24
gi|152981736|ref|YP_001352356.1| AsnC family transcriptional reg...    82   1e-17
gi|152981798|ref|YP_001355132.1| auxin efflux carrier [Janthinob...    72   1e-14

>gi|152980927|ref|YP_001351836.1| Lpr family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 155

 Score =  104 bits (260), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 80/141 (56%)

Query: 5   EPLDRTDIKILEHLQREGRCSNVELAEAVSLSPSPCLTRTKRMEESGIIAGYGAQIALDK 64
           E  DR D  +LE LQ +GR SNVEL+E V+LSP  C  R +R+E+ G+I GY AQ+    
Sbjct: 2   EKFDRYDRILLETLQSKGRASNVELSERVNLSPPQCYRRVQRLEQEGVIRGYSAQVDAAA 61

Query: 65  LGSHVEVFSEITLGSHRPADFRKFEQGAARYQEIVECYNVSGGYDYLLKIIAPTVSAFQE 124
           +G  V  F  + +   +    R+ E+   ++ EI+ECY +SG +DYLLK++A  + +   
Sbjct: 62  IGLGVTAFVNLNIAREQFKQVRELEKAIRQFPEILECYTISGDFDYLLKVVAVDLKSLSS 121

Query: 125 LMERLLEEEIGIKKFASRIVL 145
            +   L +  G+    S + L
Sbjct: 122 FLTDRLMQVPGVAGVRSMVCL 142


>gi|152981736|ref|YP_001352356.1| AsnC family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 169

 Score = 82.4 bits (202), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 1/154 (0%)

Query: 1   MRPTEPLDRTDIKILEHLQREGRCSNVELAEAVSLSPSPCLTRTKRMEESGIIAGYGAQI 60
           M     LD+ D K+L  LQ++ +     LA+ V +S   CL R + M ++GII+   A I
Sbjct: 1   MSKLHTLDKVDRKLLNLLQKDNQTPTRTLADKVHISQPTCLRRIRDMRDAGIISADVAMI 60

Query: 61  ALDKLGSHVEVFSEITLGSHRPADFRKFEQGAARYQEIVECYNVSGGYDYLLKIIAPTVS 120
               LG  +  F E++LG+      ++FE    +  E+++CY VSG YDY L +    + 
Sbjct: 61  DPFALGYGMLAFLEVSLGNQSDEHMQEFEVRMGKEAEVMQCYFVSGDYDYFLVVHVVDMD 120

Query: 121 AFQELMERLLEEEIGIKKFASRIVL-RHPFAQRV 153
           A+ + + R +     ++ F SR  + R  F  R+
Sbjct: 121 AYYQFVRRAISGSGNVRHFQSRFPMKRAKFDTRI 154


>gi|152981798|ref|YP_001355132.1| auxin efflux carrier
           [Janthinobacterium sp. Marseille]
          Length = 157

 Score = 72.4 bits (176), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 67/135 (49%)

Query: 7   LDRTDIKILEHLQREGRCSNVELAEAVSLSPSPCLTRTKRMEESGIIAGYGAQIALDKLG 66
           LD  D +IL  LQ +   +N +LA AV  SP  CL R KR+ ++G+I    A +A   +G
Sbjct: 8   LDELDRRILNALQMDASQTNNDLAAAVHASPPTCLRRVKRLIDAGVIERQVAIVAPQMVG 67

Query: 67  SHVEVFSEITLGSHRPADFRKFEQGAARYQEIVECYNVSGGYDYLLKIIAPTVSAFQELM 126
           + +    EITL         +FE   A+   +++CY VS G D++L +    + A+  L 
Sbjct: 68  AGLTSIVEITLDKQADEQQVEFEALVAQESAVLQCYRVSPGPDFVLVVQVADMPAYHVLA 127

Query: 127 ERLLEEEIGIKKFAS 141
            RL      ++   S
Sbjct: 128 HRLFATHANVRNVRS 142


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 379,100
Number of extensions: 14374
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 3
Length of query: 167
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 90
Effective length of database: 936,352
Effective search space: 84271680
Effective search space used: 84271680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)