BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0235.p
         (805 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983308|ref|YP_001354780.1| 3-hydroxyacyl-CoA dehydrogenase...  1286   0.0  

>gi|152983308|ref|YP_001354780.1| 3-hydroxyacyl-CoA dehydrogenase
           oxidoreductase protein [Janthinobacterium sp. Marseille]
          Length = 795

 Score = 1286 bits (3329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 639/795 (80%), Positives = 714/795 (89%)

Query: 11  VSNFIVKKVAVLGAGVMGAQIAAHCINARVPVVLFDLPAKEGPKNGIVQRAIENLKKLSP 70
           +SNFIV+KVAVLGAGVMGAQIAAHCINA+VPV+LFDLPAK+G KNGIV RAIENLKKLSP
Sbjct: 1   MSNFIVRKVAVLGAGVMGAQIAAHCINAKVPVILFDLPAKDGNKNGIVLRAIENLKKLSP 60

Query: 71  APLGNKDDAALIQVANYEDDLAVLEGCDLIIEAIAERMDWKHDLYKKVAPHIAPKAIFAT 130
           APL N D AA I+VANYEDDLA L+ CDLIIEAIAERMDWKHDLYKKVAPHI    IFA+
Sbjct: 61  APLANVDYAAQIEVANYEDDLAKLKDCDLIIEAIAERMDWKHDLYKKVAPHIGANTIFAS 120

Query: 131 NTSGLSINALSEGFDAALKARFCGVHFFNPPRYMHLVELIPTQSTEPHILDQLEAFLTTT 190
           NTSGLSI ALSEGF A LKARFCGVHFFNPPRYMHLVELIPT +T+P ILDQLE FLT+T
Sbjct: 121 NTSGLSITALSEGFAADLKARFCGVHFFNPPRYMHLVELIPTVATKPEILDQLEGFLTST 180

Query: 191 LGKGVVRAFDTPNFVANRVGVFGILATIIEADKYGLSVDVVDDLTGAKLGRAKSGTFRTA 250
           LGKGVVRAFDTPNF+ANRVG+FG+LAT+ EA+K+GL+VDVVDDLTG+KLGRAKSGTFRTA
Sbjct: 181 LGKGVVRAFDTPNFIANRVGIFGMLATMHEAEKFGLTVDVVDDLTGSKLGRAKSGTFRTA 240

Query: 251 DVVGLDTMGHVIRTMQDNLKDDPFFSTYATPPLLAKLVEQGALGQKSGAGYYKKVGKDIL 310
           DVVGLDTM HVI TMQ+ L+DDPFF  Y TP +L KL+  GALGQK+GAG+YKKVGKDIL
Sbjct: 241 DVVGLDTMAHVITTMQNTLQDDPFFPLYKTPEVLTKLIGGGALGQKAGAGFYKKVGKDIL 300

Query: 311 RIDPAKGDYVPGGGKADDIIARILKEKDPVKRMKALHDSTNPQGQFLWAIFRDAFHYIAV 370
           RIDPAK DYV GGGKADD++ RILKEKDP KRMKALHDSTNPQ QFLWAIFRDAFHYIAV
Sbjct: 301 RIDPAKADYVAGGGKADDLVGRILKEKDPAKRMKALHDSTNPQAQFLWAIFRDAFHYIAV 360

Query: 371 HLESVADNARDLDFAMRWGFGWSVGPFETWQAAGWKQIAQWVKEDIDAGRALSNAPLPDW 430
           HLE++ADNARD+DFA+RWGFGW+ GPFETWQAAGW+QIA WVKEDIDAG+ALSNAPLP W
Sbjct: 361 HLEAIADNARDIDFALRWGFGWNNGPFETWQAAGWQQIATWVKEDIDAGKALSNAPLPAW 420

Query: 431 VFDGRDGVHSEQGSYSPSKKTDVARSELPVYQRQAFRAPLVGEGAADGKSAGTTVFEDES 490
           VFDGRDGVH+  GS+SP +K ++ RS LPVYQRQAFRA LVG+ +A+G +AGTTVFEDES
Sbjct: 421 VFDGRDGVHAADGSWSPKQKKNIPRSNLPVYQRQAFRAALVGDQSANGHTAGTTVFEDES 480

Query: 491 VRIWHQNDDVLILSFKTKMHVIGQGVIDGMNKAVTEAEQNFKGLVIWHPDAAEGGAFSAG 550
           VRIWHQ+D+VLILSFKTKMHVIG GV  G+ +A+ EAE+N+KGLVIWH DAAEGGAFSAG
Sbjct: 481 VRIWHQDDEVLILSFKTKMHVIGAGVTAGIKQAIEEAEKNYKGLVIWHADAAEGGAFSAG 540

Query: 551 ADLQSMLPLFMSGGVKAIEPVVHQLQQAHQRLKYASVPVIAAVAGLALGGGCELLLHTAK 610
           ADLQSMLPLFMSGGVKAIEP V +LQQAHQ LKYA+VPV+AAVAGLALGGGCELLLH AK
Sbjct: 541 ADLQSMLPLFMSGGVKAIEPEVVKLQQAHQALKYANVPVVAAVAGLALGGGCELLLHAAK 600

Query: 611 RVVSIESYIGLVEVGVGLIPAGGGLKEAAVRAAREAKGNDILQFLKEYMLAAATANVSKS 670
           RV SIESYIGLVEVGVGLIPAGGGLKEAA RAA +A+GNDILQFLK Y + AATA VS+S
Sbjct: 601 RVASIESYIGLVEVGVGLIPAGGGLKEAAARAANDARGNDILQFLKNYYMNAATAAVSRS 660

Query: 671 ALEARKLGYLREDDVIVFNPYELLHVAKVEARALFDAGYRPQLPPQVPVIGRNGLATIMA 730
           ALEA+ +GYL+ DD+IVFN YELLH+AK +ARA+FDAGYR      VP+ G+ GLATI A
Sbjct: 661 ALEAQTMGYLKSDDIIVFNAYELLHIAKTQARAMFDAGYRAPRKALVPLTGKYGLATIGA 720

Query: 731 QLVNMRDGGFISAHDFKLGKMIAETVAGGEVEEGSIVNEQWLLDIERKFFMELLNHPKTQ 790
           QL+NMRDGGFISAHD+KLG MIAE V+GG++E+ S+V+EQWLLD ERK FMELLN+PKTQ
Sbjct: 721 QLLNMRDGGFISAHDYKLGMMIAEVVSGGDIEQNSLVDEQWLLDHERKAFMELLNNPKTQ 780

Query: 791 ERIMGMMQTGKPVRN 805
           ERIMGMMQTGKPVRN
Sbjct: 781 ERIMGMMQTGKPVRN 795


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,906,661
Number of extensions: 83350
Number of successful extensions: 248
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 1
Length of query: 805
Length of database: 1,221,021
Length adjustment: 91
Effective length of query: 714
Effective length of database: 884,594
Effective search space: 631600116
Effective search space used: 631600116
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)