BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0234.p (596 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980951|ref|YP_001354781.1| acyl-CoA dehydrogenase oxidored... 1036 0.0 gi|152981179|ref|YP_001352277.1| acyl-CoA dehydrogenase [Janthin... 473 e-134 gi|152980833|ref|YP_001354021.1| acyl-CoA dehydrogenase [Janthin... 100 3e-22 >gi|152980951|ref|YP_001354781.1| acyl-CoA dehydrogenase oxidoreductase protein [Janthinobacterium sp. Marseille] Length = 596 Score = 1036 bits (2678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/596 (80%), Positives = 542/596 (90%) Query: 1 MPQYNAPLRDMQFVLHELLKVEEVFKELPPHADTNRELVDQVLEEGGKFASQVLFPLNHS 60 M QY APLRDMQFVLHELL V + K LP HAD + ++++QVLEEGGKF S+VLFPLNHS Sbjct: 1 MGQYIAPLRDMQFVLHELLHVADELKVLPKHADIDADIINQVLEEGGKFTSEVLFPLNHS 60 Query: 61 GDREGCHYDRDSKTVTTPKGFKEAYQQYVQAGWAALSCDPEFGGQGLPLTINNSFYEMLN 120 GDREGC D + VT PKGFK AY+QYV AGW +L+CDPE+GGQGLP+ + NSFYEMLN Sbjct: 61 GDREGCKLDTSTHEVTPPKGFKAAYEQYVAAGWPSLTCDPEYGGQGLPMVLQNSFYEMLN 120 Query: 121 SSNQAWTMYPGLSHGAYECLHAHGSDEQKQLYLPKLVSGEWTGTMCLTEAHCGTDLGLLR 180 SSNQAWTMYPGLSHGAYECL+AHG+++QK LYLPKLVSGEWTGTMCLTEA CGTDLGLLR Sbjct: 121 SSNQAWTMYPGLSHGAYECLYAHGTEQQKALYLPKLVSGEWTGTMCLTEAQCGTDLGLLR 180 Query: 181 SKAEPQADGSYKITGNKIFISAGENDVSGNIIHLVLARLPDAPEGSKGISLFLVPKFLPN 240 SKAEPQADGSYKITG+KIFISAGE+D++ NI+HLVLARLPDAPEG+KGISLF+VPKFLP+ Sbjct: 181 SKAEPQADGSYKITGSKIFISAGEHDMAANILHLVLARLPDAPEGTKGISLFIVPKFLPD 240 Query: 241 TDGSLGARNPIFCGAIEEKMGIHGNATCQMNLDGATGWLIGQPHKGLQAMFVFMNAARLG 300 G LGARNPIFCGA+EEKMGIHGNATCQMN+DGATGWLIG+P+KGL AMFV MNAARLG Sbjct: 241 AAGKLGARNPIFCGALEEKMGIHGNATCQMNIDGATGWLIGEPNKGLNAMFVMMNAARLG 300 Query: 301 VGMQGLGLTEVAYQNALVYAKDRLQMRSLSGVKAADKPADPIIVHPDVRRMLLTAKAFAE 360 VGMQ LGLTEVAYQNALVYAKDRLQMRSL+G KA DKPADPIIVHPDVRRMLLTAKA+AE Sbjct: 301 VGMQSLGLTEVAYQNALVYAKDRLQMRSLTGPKATDKPADPIIVHPDVRRMLLTAKAYAE 360 Query: 361 GGRAFTSYVALELDKELTHPDEQVRKDSADIVALLTPVVKAFLTDNAWMATSECLQVYGG 420 GGRAF+SYVAL++DKEL HPDE VR ++ D VALLTP++KAFLTDN W++TSE +QVYGG Sbjct: 361 GGRAFSSYVALQIDKELNHPDEAVRAEAVDEVALLTPIIKAFLTDNGWISTSEAMQVYGG 420 Query: 421 HGYIAEWGMEQYVRDARINMIYEGTNTIQSLDLLGRKILMDNGAKLKKFGAQIQAFVEEH 480 HG+I+EWGMEQYVRD+RINMIYEGTNTIQSLDLLGRKIL+DNGAKL+KFGA+IQAF+EE+ Sbjct: 421 HGFISEWGMEQYVRDSRINMIYEGTNTIQSLDLLGRKILLDNGAKLRKFGAKIQAFIEEN 480 Query: 481 GTDESMSEFITPLADIGDKVTKLTMEIGMKSFANQDEAGAAAVPYLRVVGHLVFSYLFAR 540 GTDE+MSEFITPLAD+ DKVTKLTMEIGMK+F N DE GAAAVPYLRV GHLV++Y FA+ Sbjct: 481 GTDEAMSEFITPLADLADKVTKLTMEIGMKAFQNPDEVGAAAVPYLRVAGHLVYAYFFAQ 540 Query: 541 MAKIALEKQDSGDAFYTAKLATARFYFARLLPETAMLIRQARSGAGNLMALDAQLF 596 MAKIAL KQ D FY +KLATARFYFARLLPETAMLIRQARSG+ +LMALDA+LF Sbjct: 541 MAKIALAKQGDSDPFYKSKLATARFYFARLLPETAMLIRQARSGSASLMALDAELF 596 >gi|152981179|ref|YP_001352277.1| acyl-CoA dehydrogenase [Janthinobacterium sp. Marseille] Length = 596 Score = 473 bits (1217), Expect = e-134, Method: Compositional matrix adjust. Identities = 273/607 (44%), Positives = 361/607 (59%), Gaps = 27/607 (4%) Query: 4 YNAPLRDMQFVLHELLKVEEVFKELPPHADTNRELVDQVLEEGGKFASQVLFPLNHSGDR 63 Y APL+DM FV++EL + + LP D E V+ VLEE +F +V+ PLN +GDR Sbjct: 3 YVAPLKDMLFVMNELADLAAI-NALPGCEDATPETVEAVLEENARFCGEVIAPLNQAGDR 61 Query: 64 EGCHYDRDSKTVTTPKGFKEAYQQYVQAGWAALSCDPEFGGQGLPLTINNSFYEMLNSSN 123 + +D K TTP GFKEA++ Y AGW + +FGGQGLP + EMLNS++ Sbjct: 62 HPSEW-KDGKVTTTP-GFKEAFKAYAAAGWQGVQHPVDFGGQGLPKLVATPCMEMLNSAS 119 Query: 124 QAWTMYPGLSHGAYECLHAHGSDEQKQLYLPKLVSGEWTGTMCLTEAHCGTDLGLLRSKA 183 ++ + P L+ GA E L GSD+QK+ +LP ++G+WTGTM LTE G+DL L+RS+A Sbjct: 120 LSFALCPLLTDGAIEALMTAGSDQQKEKFLPNFIAGKWTGTMNLTEPQAGSDLALVRSRA 179 Query: 184 EPQADGSYKITGNKIFISAGENDVSGNIIHLVLARLPDAPEGSKGISLFLVPKFLPNTDG 243 PQ DG+YKI+G KIFI+ GE+D++ NIIHLVLAR PDAPEG KGISLFLVPKFL N DG Sbjct: 180 VPQGDGTYKISGTKIFITYGEHDMAENIIHLVLARTPDAPEGVKGISLFLVPKFLVNEDG 239 Query: 244 SLGARNPIFCGAIEEKMGIHGNATCQMNL---DGATGWLIGQPHKGLQAMFVFMNAARLG 300 SLG RN FC +IE K+GI + T + GA G LIGQ ++GL+ MF+ MNAAR Sbjct: 240 SLGERNDAFCVSIEHKLGIKASPTAVLQFGDHGGAIGTLIGQENRGLETMFIMMNAARFA 299 Query: 301 VGMQGLGLTEVAYQNALVYAKDRLQMRSLSGVKAADKPADPIIVHPDVRRMLLTAKAFAE 360 VG+QG+ + E AYQ A+ YAKDR+Q + L G A II PDVRRML++ +A E Sbjct: 300 VGIQGISVAERAYQKAVAYAKDRVQSKDLEG----SATAVSIIHQPDVRRMLMSMRAQIE 355 Query: 361 GGRAFTSYVALELDKELTHPDEQVRKDSADIVALLTPVVKAFLTDNAWMATSECLQVYGG 420 RA A D H DE+VR L P++K + T+ + S LQ++GG Sbjct: 356 AARALAYVGASAFDIAHHHGDEKVRDAQQAFYEFLVPIIKGWSTEMSIDVASTGLQIHGG 415 Query: 421 HGYIAEWGMEQYVRDARINMIYEGTNTIQSLDLLGRKILMDNGAKLKKFGAQIQAFVEEH 480 G+I E G QY RDARI IYEGT IQ+ DL+GRK + D GA + A ++A Sbjct: 416 MGFIEETGAAQYYRDARILTIYEGTTAIQANDLVGRKTVRDGGAVARGIIAAVRA----- 470 Query: 481 GTDESMSEFITP-LADIGDKVTKLTM---EIGMKSFAN--QDEAG--AAAVPYLRVVGHL 532 T+ ++ TP L IG + + E+ AN D G A +VPYL++ G + Sbjct: 471 -TESELARAATPDLKAIGAHLAAASTALDEVVAYVVANIQSDIKGVFAGSVPYLKLAGIV 529 Query: 533 VFSYLFARMAKIALEKQD--SGDA-FYTAKLATARFYFARLLPETAMLIRQARSGAGNLM 589 + + R A IA K D SGDA FY AK+ATARF+ L + G+ ++ Sbjct: 530 LCGWQMGRAALIAQAKLDAGSGDAKFYQAKIATARFFADYFLSQAGAYRSAITGGSAGVL 589 Query: 590 ALDAQLF 596 ALD F Sbjct: 590 ALDESQF 596 >gi|152980833|ref|YP_001354021.1| acyl-CoA dehydrogenase [Janthinobacterium sp. Marseille] Length = 547 Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 100/369 (27%), Positives = 166/369 (44%), Gaps = 43/369 (11%) Query: 130 PGLSHGAYECLHAHGSDEQKQLYLPKLVSGEWTGTMCLTEAHCGTDLGLLRSKAEPQADG 189 P L + L + G DE + L LP S M +TE G+D+ + A P Sbjct: 148 PALFATLKDKLFSTGHDE-RDLPLPDKASM--LVGMGMTEKQGGSDVRSNTTVARPLESA 204 Query: 190 S----YKITGNKIFISAGENDVSGNIIHLVLARLPDAPEGSKGISLFLVPKFLPNTDGSL 245 Y +TG+K F SA D HLVLAR G+S F VP++ P+ Sbjct: 205 GRGQPYALTGHKWFFSAPMCDA-----HLVLART------EAGLSCFFVPRWRPD----- 248 Query: 246 GARNPIFCGAIEEKMGIHGNATCQMNLDGATGWLIGQPHKGLQAMFVFMNAARLGVGMQG 305 G++N I +++K+G N++ ++ A G ++G+ +G+ + N RL + Sbjct: 249 GSKNAILIQRLKDKLGNRSNSSSEVEFQDAYGVMVGEDGRGIPTIIEMANHTRLDCVIGS 308 Query: 306 LGLTEVAYQNALVYAKDRLQMRSLSGVKAADKPADPIIVHPDVRRMLLTAKAFAEGGRAF 365 GL +NALV A + R G+ A++ ++ + + L ++A Sbjct: 309 TGL----MRNALVQAIHHARHRHAFGLPLAEQ----ALMQNVLADLALESEA-------- 352 Query: 366 TSYVALELDKELTHPDEQVRKDSADIVALLTPVVKAFLTDNAWMATSECLQVYGGHGYIA 425 + + L L + D+ V + +V TP K ++ A T EC++V+GG+GY+ Sbjct: 353 ATRLMLRLAQAAEAIDDPVERAWRRVV---TPAAKFWICKRALEFTGECMEVWGGNGYVE 409 Query: 426 EWGMEQYVRDARINMIYEGTNTIQSLDLLGRKILMDNGAKLKKFGAQIQAFVEEHGTDES 485 M + R+A +N I+EG+ + LD+L R I + A A + E+ G E Sbjct: 410 NAPMARMYREAPVNSIWEGSGNVMCLDVL-RAIAKEADAFKLLLDALLDIAKEDKGLREL 468 Query: 486 MSEFITPLA 494 ++E T LA Sbjct: 469 IAELRTDLA 477 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,426,006 Number of extensions: 62417 Number of successful extensions: 140 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 133 Number of HSP's successfully gapped: 3 Length of query: 596 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 507 Effective length of database: 891,988 Effective search space: 452237916 Effective search space used: 452237916 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)