BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0232.p
         (141 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980849|ref|YP_001353984.1| hypothetical protein mma_2294 [...   149   6e-38

>gi|152980849|ref|YP_001353984.1| hypothetical protein mma_2294
           [Janthinobacterium sp. Marseille]
          Length = 136

 Score =  149 bits (376), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 78/127 (61%), Positives = 91/127 (71%), Gaps = 1/127 (0%)

Query: 7   LRKECPPGACDCQREALLECLHAPEARVLWLTREEEKRLIERITRVASYEELLHVGSLMR 66
           LR+ECP G C C+R+ LL      + R+L LT+ +EK+LIERI  ++SY +L HV   M 
Sbjct: 8   LREECPQGLCTCERDELLRKPDG-DVRILQLTKWQEKQLIERIEAISSYTDLKHVEERMY 66

Query: 67  KNLGIHLHISPGPNEVRTVRGLQIHLAEQPGLCRKTRETIPAAIRKCLENNPTIVYALLD 126
             LGI LHISPG NEVRTVRGL I L EQ GLCRKTR+TIPAAIRKCLE NP I YA+LD
Sbjct: 67  AQLGIVLHISPGLNEVRTVRGLNIVLQEQQGLCRKTRQTIPAAIRKCLERNPAITYAILD 126

Query: 127 AHDLLGA 133
           A  L G 
Sbjct: 127 AEGLFGV 133


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 337,341
Number of extensions: 11980
Number of successful extensions: 37
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 1,221,021
Length adjustment: 74
Effective length of query: 67
Effective length of database: 947,443
Effective search space: 63478681
Effective search space used: 63478681
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)