BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0222.p
         (391 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980344|ref|YP_001353278.1| L-lactate dehydrogenase (cytoch...   278   5e-76

>gi|152980344|ref|YP_001353278.1| L-lactate dehydrogenase
           (cytochrome) [Janthinobacterium sp. Marseille]
          Length = 381

 Score =  278 bits (710), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 143/376 (38%), Positives = 222/376 (59%), Gaps = 8/376 (2%)

Query: 16  SIEELRAIARKRVPNFCFEYVEGGAEEEISLRRNREVFSHIGFLPRTLVDVSVRRQARKL 75
           +IE+LR +A+KRVP   ++Y + G+  E + R N   F+ + F  R  V++  R     +
Sbjct: 6   NIEDLRVLAQKRVPRMFYDYADAGSWTESTYRANSSDFAPMKFRQRVAVNMENRTLKTTM 65

Query: 76  FGQEIASPFLIGPTGFSGLLAREGDIAMASAAAGAGIPFVLTNVSTTSLEEVVRRSGAQV 135
            GQE+  P  I PTG +G+   +G+I  A AA   G+PF L+ +S  S+E++   +    
Sbjct: 66  VGQEVHMPVAIAPTGLTGMQHADGEILAARAAEKFGVPFTLSTMSICSIEDIAANTSKPF 125

Query: 136 WQQVYLYRDRAFVASVAQRAQAAGIDTLVLTTDSAVYGKREWDVRN-FSSPRRLDWRNKL 194
           W Q+Y+ +DR F+  + +RA+ A    LVLT D  + G+R  D++N  S+P +L   N +
Sbjct: 126 WFQLYVMKDRPFIERLIERAKVAKCSALVLTLDLQILGQRHKDLKNGLSAPPKLTVANIV 185

Query: 195 DVLCHPRWLIDILYPHGFPR--FANLGDLLPADQTSVRGAAASILGQSLSPALDWRDVQW 252
           +++  PRW + +L   G  R  F N+  +  A   S   + +S   Q    AL W+DV+W
Sbjct: 186 NMMTKPRWCMGML---GTKRRSFGNI--VGHASDVSDMSSLSSWTSQQFDLALSWKDVEW 240

Query: 253 LRGIWNGKLVLKGVMQVQDAQRAVALGMDGIVLSNHGGRQLDGALSTMDVLPEVVAAVKG 312
           ++  W GKL++KG+M  +DA+ AVA G D I++SNHGGRQLDGALS++  LP +V AV  
Sbjct: 241 IKRCWGGKLIIKGIMDAEDARLAVASGADAIIVSNHGGRQLDGALSSIAALPSIVEAVGD 300

Query: 313 QLTVMLDGGFRRGADIVKAIALGADAVLLGRATTYGLAAGGQAGAARALDILRSEVDRVL 372
           Q+ V +DGG R G D++KA+ALGA    +GR+  YGL A G+ G  + L I+ +E+D  +
Sbjct: 301 QIEVHMDGGIRSGQDVIKALALGAKGTYIGRSFLYGLGAMGEEGVTKCLKIIENELDLTM 360

Query: 373 ALLACPDIDQLDATYL 388
           A     D+ ++D   L
Sbjct: 361 AFCGLTDVKKVDKNIL 376


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 869,353
Number of extensions: 35169
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 306
Effective length of database: 906,776
Effective search space: 277473456
Effective search space used: 277473456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)