BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0221.p (227 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport s... 157 5e-40 gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate tr... 103 1e-23 gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type tr... 89 3e-19 gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport s... 77 1e-15 >gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 223 Score = 157 bits (397), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 86/193 (44%), Positives = 131/193 (67%) Query: 1 MHYEFDFASVAAHWLLLLQGAWSTIQLSFLATLLGFLLGVVCAVARGSRHGWLCAAVGGY 60 M Y+F+F S + +L++G +T++L + +LG +G+ A AR WL V Y Sbjct: 1 MAYQFEFLSTFDYSGVLVKGVLTTVELIAVGGVLGVAVGIFGAWARTQEPRWLRPVVSAY 60 Query: 61 VELIRNTPLLIQCYFLIFGLSSVGITMPVMAGATMALVINIGAYSCEIVRAGIESIQHGQ 120 VELIRNTP LIQ +F+ FGL S+G+ + M A +A+VIN+GAYS EI+RAG+ ++ GQ Sbjct: 61 VELIRNTPFLIQLFFIFFGLPSIGVQITEMQAAILAMVINLGAYSTEIIRAGVVAVARGQ 120 Query: 121 IEAAHCLGLSPLQVLRHVVLQPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 IEAA L ++ +Q+ RH++L+PA++++WPAL+SQ V++ML S++ S + EEL AN + Sbjct: 121 IEAALSLSMTRVQIFRHIILRPALQKIWPALSSQIVIVMLGSAVCSQIAVEELSFAANFI 180 Query: 181 QSDTFRNFEVFLV 193 Q FR FE +L+ Sbjct: 181 QGRNFRAFEAYLI 193 >gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate transport system permease protein [Janthinobacterium sp. Marseille] Length = 228 Score = 103 bits (256), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 107/208 (51%), Gaps = 9/208 (4%) Query: 4 EFDFASVAAHWLLLLQGAWSTIQLSFLATLLGFLLGVVCAVARGSRHGWLCAAVGGYVEL 63 + DF + W LL G T+QL+ +A G + G + A+AR S + L YV L Sbjct: 3 DLDFEIITRTWPYLLAGLQYTLQLTVVAAFGGVIFGTLLAMARLSSNKTLSLIAAAYVNL 62 Query: 64 IRNTPLLIQCYFLIFGLSSV-----GITMPVMAGATMALVINI----GAYSCEIVRAGIE 114 +R+ PLL+ ++ F + V G PV GA + I AY CEI+RAGI+ Sbjct: 63 MRSIPLLLVIFWFYFLMPIVLQTITGSERPVQLGADRSAYITFIMFEAAYFCEIMRAGIQ 122 Query: 115 SIQHGQIEAAHCLGLSPLQVLRHVVLQPAVERVWPALTSQFVLMMLASSILSSVGAEELL 174 SI GQ+ A + LGL+ Q ++ VVL A + P L +Q +++ S++S + + + Sbjct: 123 SISKGQVNAGYALGLTYRQSMQLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFV 182 Query: 175 GVANRVQSDTFRNFEVFLVLWVLYLALS 202 G A +V R E++L + ++Y LS Sbjct: 183 GAAVKVAQRDSRVVEMYLFVAIVYFVLS 210 >gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type transport system permease protein [Janthinobacterium sp. Marseille] Length = 243 Score = 89.0 bits (219), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 102/197 (51%), Gaps = 11/197 (5%) Query: 17 LLQGAWSTIQLSFLATLLGFLLGVVCAVARGSRHGWLCAAVGGYVELIRNTPLLIQC--- 73 LL G T+ ++ A + F++G + V R S WL G YVEL RN PLL+Q Sbjct: 21 LLSGLGWTLAVALFAWIFAFVVGSIVGVGRTSEKRWLVRLGGAYVELFRNIPLLVQFFVW 80 Query: 74 YFLIFGL----SSVGITMPVMAGATMALVINIGAYS----CEIVRAGIESIQHGQIEAAH 125 YF++ GL + IT+ + V+ +G ++ E VR+GI+++ GQ A + Sbjct: 81 YFVVPGLVPAVKAWVITLDPTEHQFVTAVVCLGFFTSSRIAEQVRSGIQALPRGQRNAGY 140 Query: 126 CLGLSPLQVLRHVVLQPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRVQSDTF 185 LGL+ Q R+V+L A + P LTS+ + ++ +++ S+G EL + TF Sbjct: 141 ALGLTTAQTYRYVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIGLVELFFRTREMGEMTF 200 Query: 186 RNFEVFLVLWVLYLALS 202 R FE F ++Y+ ++ Sbjct: 201 RYFEAFGAATLIYVVIA 217 >gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 218 Score = 76.6 bits (187), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 98/186 (52%), Gaps = 1/186 (0%) Query: 16 LLLQGAWSTIQLSFLATLLGFLLGVVCAVARGSRHGWLCAAVGGYVELIRNTPLLIQCYF 75 LLL G W T+ LS + LLG +LG++ R S+ G L Y+E+ + TPLL+Q + Sbjct: 13 LLLAGRW-TVVLSLVTFLLGGMLGLLILFFRTSKSGALRNVARIYIEIFQGTPLLMQLFL 71 Query: 76 LIFGLSSVGITMPVMAGATMALVINIGAYSCEIVRAGIESIQHGQIEAAHCLGLSPLQVL 135 + FG++ GI +P A + L + ++ EI R +E+I GQ EA+ L ++ +Q + Sbjct: 72 VFFGIALFGIEVPAWLAAGLTLTLWSASFLAEIWRGCVEAIPRGQWEASSVLAMNYVQQM 131 Query: 136 RHVVLQPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRVQSDTFRNFEVFLVLW 195 R+V+L A+ P V ++ +++ S +G EL A + + TF F V+ Sbjct: 132 RYVILPQALRIALPPTIGFSVQIIKGTAVTSIIGFVELSKAATVITNATFMPFTVYAAAG 191 Query: 196 VLYLAL 201 + Y L Sbjct: 192 LFYFIL 197 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.330 0.140 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 488,477 Number of extensions: 17242 Number of successful extensions: 86 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 84 Number of HSP's successfully gapped: 4 Length of query: 227 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 147 Effective length of database: 925,261 Effective search space: 136013367 Effective search space used: 136013367 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 128 (53.9 bits)