BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0220.p (215 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport s... 185 2e-48 gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type tr... 74 5e-15 gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate tr... 74 7e-15 gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport s... 55 4e-09 >gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 218 Score = 185 bits (469), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 101/206 (49%), Positives = 144/206 (69%), Gaps = 3/206 (1%) Query: 9 LLQGAWGTLLLSALTLSLGAMAGLILALARVSPLAAVRHMASAWIQLIQGTPLLVLMGMC 68 LL G W T++LS +T LG M GL++ R S A+R++A +I++ QGTPLL+ + + Sbjct: 14 LLAGRW-TVVLSLVTFLLGGMLGLLILFFRTSKSGALRNVARIYIEIFQGTPLLMQLFLV 72 Query: 69 FYGPALAGIGTVDALPAAATAMVIYASAFLGEIWRGCIQAVHKSQWEAAECLGLTRWQRM 128 F+G AL GI V A AA + +++++FL EIWRGC++A+ + QWEA+ L + Q+M Sbjct: 73 FFGIALFGI-EVPAWLAAGLTLTLWSASFLAEIWRGCVEAIPRGQWEASSVLAMNYVQQM 131 Query: 129 WMIVLPQALRMATPPTVGFAVQVIKNTSVASLVIGFAELSYNAKVINNSTFQPFLYFGSA 188 ++LPQALR+A PPT+GF+VQ+IK T+V S +IGF ELS A VI N+TF PF + +A Sbjct: 132 RYVILPQALRIALPPTIGFSVQIIKGTAVTS-IIGFVELSKAATVITNATFMPFTVYAAA 190 Query: 189 ALLYFAMCYPLSRWSRALERKLHAHH 214 L YF +C+PLSR+S+ LERK HA H Sbjct: 191 GLFYFILCWPLSRYSQFLERKFHAAH 216 >gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type transport system permease protein [Janthinobacterium sp. Marseille] Length = 243 Score = 74.3 bits (181), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 11/213 (5%) Query: 8 SLLQGAWGTLLLSALTLSLGAMAGLILALARVSPLAAVRHMASAWIQLIQGTPLLVLMGM 67 SLL G TL ++ + G I+ + R S + + A+++L + PLLV + Sbjct: 20 SLLSGLGWTLAVALFAWIFAFVVGSIVGVGRTSEKRWLVRLGGAYVELFRNIPLLVQFFV 79 Query: 68 CFYG-----PAL-AGIGTVD----ALPAAATAMVIYASAFLGEIWRGCIQAVHKSQWEAA 117 ++ PA+ A + T+D A + + S+ + E R IQA+ + Q A Sbjct: 80 WYFVVPGLVPAVKAWVITLDPTEHQFVTAVVCLGFFTSSRIAEQVRSGIQALPRGQRNAG 139 Query: 118 ECLGLTRWQRMWMIVLPQALRMATPPTVGFAVQVIKNTSVASLVIGFAELSYNAKVINNS 177 LGLT Q ++LP A R+ PP + +IKNT+VA IG EL + + + Sbjct: 140 YALGLTTAQTYRYVLLPMAYRIIIPPLTSELMNLIKNTAVA-YSIGLVELFFRTREMGEM 198 Query: 178 TFQPFLYFGSAALLYFAMCYPLSRWSRALERKL 210 TF+ F FG+A L+Y + +R +ER+L Sbjct: 199 TFRYFEAFGAATLIYVVIAMTANRLMALVERRL 231 >gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate transport system permease protein [Janthinobacterium sp. Marseille] Length = 228 Score = 73.9 bits (180), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 13/212 (6%) Query: 9 LLQGAWGTLLLSALTLSLGAMAGLILALARVSPLAAVRHMASAWIQLIQGTPLL-VLMGM 67 LL G TL L+ + G + G +LA+AR+S + +A+A++ L++ PLL V+ Sbjct: 16 LLAGLQYTLQLTVVAAFGGVIFGTLLAMARLSSNKTLSLIAAAYVNLMRSIPLLLVIFWF 75 Query: 68 CFYGPALAGIGTVDALP-------AAATAMVIYASAFLGEIWRGCIQAVHKSQWEAAECL 120 F P + T P +A +++ +A+ EI R IQ++ K Q A L Sbjct: 76 YFLMPIVLQTITGSERPVQLGADRSAYITFIMFEAAYFCEIMRAGIQSISKGQVNAGYAL 135 Query: 121 GLTRWQRMWMIVLPQALRMATPPTVGFAVQVIKNTSVASL--VIGFAELSYNAKVINNST 178 GLT Q M ++VLPQA R P + + + ++ S+ SL V F + ++ Sbjct: 136 GLTYRQSMQLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFVGAAVKVAQRDSRV 195 Query: 179 FQPFLYFGSAALLYFAMCYPLSRWSRALERKL 210 + +L+ A++YF + + LS + L+++ Sbjct: 196 VEMYLF---VAIVYFVLSFALSTLVKQLQKRF 224 >gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 223 Score = 54.7 bits (130), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 4/138 (2%) Query: 46 RHMASAWIQLIQGTPLLVLMGMCFYGPALAGIGT-VDALPAAATAMVIYASAFLGEIWRG 104 R + SA+++LI+ TP L+ + F+G L IG + + AA AMVI A+ EI R Sbjct: 54 RPVVSAYVELIRNTPFLIQLFFIFFG--LPSIGVQITEMQAAILAMVINLGAYSTEIIRA 111 Query: 105 CIQAVHKSQWEAAECLGLTRWQRMWMIVLPQALRMATPPTVGFAVQVIKNTSVASLVIGF 164 + AV + Q EAA L +TR Q I+L AL+ P V V+ ++V S I Sbjct: 112 GVVAVARGQIEAALSLSMTRVQIFRHIILRPALQKIWPALSSQIVIVMLGSAVCSQ-IAV 170 Query: 165 AELSYNAKVINNSTFQPF 182 ELS+ A I F+ F Sbjct: 171 EELSFAANFIQGRNFRAF 188 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.327 0.135 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 439,651 Number of extensions: 15343 Number of successful extensions: 67 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 64 Number of HSP's successfully gapped: 4 Length of query: 215 Length of database: 1,221,021 Length adjustment: 79 Effective length of query: 136 Effective length of database: 928,958 Effective search space: 126338288 Effective search space used: 126338288 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 127 (53.5 bits)