BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0219.p (242 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 279 1e-76 gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type tr... 210 6e-56 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 166 1e-42 gi|152980731|ref|YP_001354730.1| phosphonate ABC-type transport ... 157 6e-40 gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport sy... 146 9e-37 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 279 bits (714), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 136/237 (57%), Positives = 179/237 (75%), Gaps = 1/237 (0%) Query: 4 IVELQAVHKRFGNNAVLRGVSFKVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQISV 63 ++ + V K +G+N VL+G+ V GEV+AIIGKSGSGKST LRCIN LE ID G ISV Sbjct: 3 LIAIDNVKKSYGSNQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGSISV 62 Query: 64 CGHAVHTTQLDLRALRRDVGIVFQSYNLFAHLTVLQNITLGPTAVKRLAPAEAQELARQV 123 G + ++L+LR LR VG++FQ +NLF HL+V +NI + P VK ++ +A+ LA + Sbjct: 63 AGSHLGKSELELRNLRLKVGMIFQQFNLFPHLSVGRNIMISPMIVKGVSEKDARALAMKN 122 Query: 124 LERVGLGDKAQAYPEQLSGGQQQRVAIARSLAMQPQLMLFDEVTSALDPELTGEVLKIME 183 LE+VGL +K ++P+QLSGGQQQRVAIAR+L+M+PQ +L DEVTSALDPEL EVL ++ Sbjct: 123 LEKVGLSEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSALDPELVNEVLNVVR 182 Query: 184 QMAAEGMTMILVTHEMSFARRVADQVIFMHQGQVWEQGGP-DILDSPATPELRNFVG 239 +A EGMT+I+VTHEM FAR V D+V+FMHQG+V E G P DI +PATPEL+ F+G Sbjct: 183 GLAHEGMTLIMVTHEMRFAREVCDRVVFMHQGKVHEIGAPEDIFANPATPELKQFLG 239 >gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 210 bits (535), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 107/221 (48%), Positives = 151/221 (68%) Query: 4 IVELQAVHKRFGNNAVLRGVSFKVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQISV 63 ++EL V K +GN VL + +VA+G+VV + G SGSGKST ++ +N LE G+I+V Sbjct: 1 MIELDKVSKWYGNFQVLTDCTTQVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQQGKITV 60 Query: 64 CGHAVHTTQLDLRALRRDVGIVFQSYNLFAHLTVLQNITLGPTAVKRLAPAEAQELARQV 123 G +V + +L +LR +G+VFQ++ LF HL++ +N+TL V + + +A E + Sbjct: 61 DGISVGDPKTNLSSLRSRIGMVFQNFELFPHLSISENLTLAQVKVLKRSLPDATERGLKY 120 Query: 124 LERVGLGDKAQAYPEQLSGGQQQRVAIARSLAMQPQLMLFDEVTSALDPELTGEVLKIME 183 L+RVGL +P QLSGGQQQRVAIAR+L+M P MLFDE TSALDPE+ EVL +M Sbjct: 121 LDRVGLIAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMV 180 Query: 184 QMAAEGMTMILVTHEMSFARRVADQVIFMHQGQVWEQGGPD 224 +A EGMTM++VTHEM FA++VA++VIFM +G + E D Sbjct: 181 GLAQEGMTMMVVTHEMGFAKKVANRVIFMDKGLIVEDCTKD 221 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 166 bits (420), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 97/244 (39%), Positives = 146/244 (59%), Gaps = 15/244 (6%) Query: 5 VELQAVHKRFGNNAVLRGVSFKVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQISVC 64 +E++ + K+FGN L VS GE+ A++G SG GK+T LR I LEQ D GQ+ + Sbjct: 3 IEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 65 GHAVHTTQLDLRALRRDVGIVFQSYNLFAHLTVLQNITLG----PTAVKRLAPAEAQ--E 118 G + R VG VFQ Y LF H+TV +NI G P A + P+E+Q E Sbjct: 63 GEDASARHVR----ERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATR---PSESQIKE 115 Query: 119 LARQVLERVGLGDKAQAYPEQLSGGQQQRVAIARSLAMQPQLMLFDEVTSALDPELTGEV 178 ++LE V L A YP QLSGGQ+QR+A+AR+LA++P+++L DE ALD ++ E+ Sbjct: 116 KVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKEL 175 Query: 179 LKIMEQMAAE-GMTMILVTHEMSFARRVADQVIFMHQGQVWEQGGP-DILDSPATPELRN 236 + + ++ + +T I VTH+ A VADQ++ M++G V + G P D+ ++PA+P + Sbjct: 176 RRWLRRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPFVYG 235 Query: 237 FVGT 240 F+G Sbjct: 236 FLGN 239 >gi|152980731|ref|YP_001354730.1| phosphonate ABC-type transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 262 Score = 157 bits (397), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 90/231 (38%), Positives = 139/231 (60%), Gaps = 7/231 (3%) Query: 4 IVELQAVHKRFGNNAVLRGVSFKVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQISV 63 +++L V R+G+ LR S K+ +G+ ++G SG+GKST LRCIN + Q AG I V Sbjct: 1 MIQLNDVSVRYGDTYALRSTSLKLHKGQFTVLLGASGAGKSTLLRCINMMCQPSAGTIDV 60 Query: 64 CGHAVHTTQLDLRALRRDVGIVFQSYNLFAHLTVLQNITLG----PTAVKRLAP--AEAQ 117 G + + L+A RR G+VFQ + L A T LQN+ +G T ++ L P E Q Sbjct: 61 VGLGLLQNRRVLQAHRRQTGMVFQQHQLIARRTALQNVLMGRLGYHTTLRSLFPLSQEEQ 120 Query: 118 ELARQVLERVGLGDKAQAYPEQLSGGQQQRVAIARSLAMQPQLMLFDEVTSALDPELTGE 177 + + L+RVGL KA +QLSGGQQQRV IAR+L QP+L+L DE ++LDP + + Sbjct: 121 RIGLRALDRVGLLHKALTRVDQLSGGQQQRVGIARALTQQPKLILADEPVASLDPATSEK 180 Query: 178 VLKIMEQMAAE-GMTMILVTHEMSFARRVADQVIFMHQGQVWEQGGPDILD 227 VL+I+ Q+ E G++ ++ H++ A + +D+++ + G+V P L+ Sbjct: 181 VLEILRQICKEDGISAVVSLHQVDLALKYSDRIVGLAHGKVMFDAVPTDLN 231 >gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 363 Score = 146 bits (369), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 90/230 (39%), Positives = 135/230 (58%), Gaps = 13/230 (5%) Query: 19 VLRGVSFKVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQISVCGHAVHTTQLDLRAL 78 ++ +SF + RGE+ ++G+SG GK+T LR I E + AG+I++ G + Q Sbjct: 29 IVHSLSFALQRGEIGCLLGQSGCGKTTVLRAIAGFESLIAGRITLGGKELSNAQHTTVPE 88 Query: 79 RRDVGIVFQSYNLFAHLTVLQNITLGPTAVKRLAPAEAQELARQVLERVGLGDKAQAYPE 138 R VG+VFQ Y LF HL+V NI G +++LA AE ++L VGL + + +P Sbjct: 89 ARHVGVVFQDYALFPHLSVSDNIGFG---LRKLAAAERNGRINKLLALVGLQAQEKKFPH 145 Query: 139 QLSGGQQQRVAIARSLAMQPQLMLFDEVTSALDPE----LTGEVLKIMEQMAAEGMTMIL 194 +LSGGQQQRVA+AR+LA QP L+L DE S LD + L EV I++++ G T +L Sbjct: 146 ELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKEV---GTTAVL 202 Query: 195 VTHEMSFARRVADQVIFMHQGQV--WEQGGPDILDSPATPELRNFVGTGL 242 VTH+ A +ADQ+ M G + W+Q ++ PA + +F+G G+ Sbjct: 203 VTHDQHEAFAIADQIGVMQDGVIVQWDQAY-NLYHRPANRFVADFIGLGV 251 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 551,223 Number of extensions: 21147 Number of successful extensions: 282 Number of sequences better than 1.0e-08: 62 Number of HSP's gapped: 182 Number of HSP's successfully gapped: 66 Length of query: 242 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 161 Effective length of database: 921,564 Effective search space: 148371804 Effective search space used: 148371804 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)