BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0218.p
         (269 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981681|ref|YP_001351726.1| ABC transporter substrate bindi...   177   7e-46
gi|152981667|ref|YP_001351969.1| solute-binding periplasmic prot...    55   6e-09

>gi|152981681|ref|YP_001351726.1| ABC transporter substrate binding
           protein [Janthinobacterium sp. Marseille]
          Length = 259

 Score =  177 bits (448), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 99/251 (39%), Positives = 145/251 (57%), Gaps = 1/251 (0%)

Query: 11  LRGALLGLLLLGASTAQADQLDTIMAAKKLRVAIDLAVPPYSMKDDKLKLIGSDVETAQL 70
           L G + G LLL  + A+AD LD I     LRVA+    PP+      +   G D++ A L
Sbjct: 7   LIGLMAGALLL-TNVARADALDDIQKKGVLRVAVPQDFPPFGSVTTDMTPQGLDIDVATL 65

Query: 71  MAKDFGLELEVVPTTLTNRVPFLQTNKADVVISAFSITAERAKVIDFSVPYAPILVVVGA 130
           +AK  G+++E++P T  NR+P+LQT K D+VIS+     ER KVIDFS  YAP    V  
Sbjct: 66  IAKKLGVKVELIPVTSANRIPYLQTKKVDLVISSMGKNPEREKVIDFSAAYAPFFNGVFG 125

Query: 131 PRSMKITGPADLAGKKVIATRGTTNDQELTKIAPPSTTITRFDDDATSMTAMVSGQADIW 190
           P   K+  PADLAGK +  TRG+  D EL+KIAP S TI R++D+  ++++ +S Q  + 
Sbjct: 126 PADQKVAAPADLAGKTIGVTRGSVEDLELSKIAPESATIKRYEDNNGTISSFLSNQVQLV 185

Query: 191 VTSPMLLKVVNEKNPMRDIENKLTLKANLLAVGLRKGEPRLKEKIDGWIRAKLGNGQLNA 250
            T  ++   +  KNP +  E K  +K +  ++GL KGE +L EK++  I     +G LN 
Sbjct: 186 ATGNVIAAAIIAKNPPKKPETKFLIKNSPCSIGLNKGEEKLLEKVNAIIAQAKKDGSLNT 245

Query: 251 IYKKYHHAELP 261
           + +K+    LP
Sbjct: 246 LTEKWLGLPLP 256


>gi|152981667|ref|YP_001351969.1| solute-binding periplasmic protein
           of glutamate/aspartate ABC transporter
           [Janthinobacterium sp. Marseille]
          Length = 300

 Score = 54.7 bits (130), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 101/237 (42%), Gaps = 28/237 (11%)

Query: 50  PYSMKDDKLKLIGSDVETA----QLMAKDFGL-ELEVV--PTTLTNRVPFLQTNKADVVI 102
           P+S  DDK + IG  V+        +  D  L  L+VV  P T +NR+P L+    D+  
Sbjct: 51  PFSFLDDKQQPIGYAVDLCMKIVDTVKADLKLPNLKVVMQPVTSSNRIPLLRNGTIDLEC 110

Query: 103 SAFSITAERAKVIDFSVPYAPILVVVGAPRSMKITGPADLAGKK-----------VIATR 151
            + + +  R + + F   Y  I V     ++  I    DL GK            ++   
Sbjct: 111 GSTTNSKVRQEQVSFGPNYFVINVTAAVKKTSNINSLDDLNGKTISTTSGTTSVPLLKGY 170

Query: 152 GTTNDQELTKIAPPSTTITRFDDDATSMTAMVSGQADIWVTSPMLL--KVVNEKNPMRDI 209
             T + ++ +I           D A +   M   +A  +V   +LL  ++ N K P    
Sbjct: 171 KKTENIQVKEIYG--------KDHAEAFLLMADDRAVAFVMDNILLAGQIANSKRPGDYK 222

Query: 210 ENKLTLKANLLAVGLRKGEPRLKEKIDGWIRAKLGNGQLNAIYKKYHHAELPPEILN 266
               +L     ++ LRK +P+ K  +D  I A + +G++N IY K+    +PP+ LN
Sbjct: 223 ILPESLSQEPYSMMLRKDDPQFKALVDKSIGAVMKSGEINKIYAKWFTTPIPPKGLN 279


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 543,707
Number of extensions: 20021
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 269
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 187
Effective length of database: 917,867
Effective search space: 171641129
Effective search space used: 171641129
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)