BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0215.p
         (265 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982063|ref|YP_001354787.1| endonuclease/exonuclease/phosph...   357   e-100

>gi|152982063|ref|YP_001354787.1|
           endonuclease/exonuclease/phosphatase family protein
           [Janthinobacterium sp. Marseille]
          Length = 264

 Score =  357 bits (917), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 170/264 (64%), Positives = 207/264 (78%), Gaps = 1/264 (0%)

Query: 1   MKLRVATYNIHKGVTSFAGRPRILALKQALAQLDPDILFLQEVQGRHDLNALRHASNWPQ 60
           M+LR+ TYNIHKGV+SF  RPRI ALKQA+  +  D+LFLQEVQGRHDL+AL+HA++WP+
Sbjct: 1   MQLRITTYNIHKGVSSFGSRPRIHALKQAINSMKSDVLFLQEVQGRHDLHALKHATDWPE 60

Query: 61  QGQHEFLAGDTHHAAYGMNAVYDHGHHGNALISRFEIASIRNQDVSDHAYESRGILHCVV 120
             Q +FLAGD+H  AYGMNAVYDHGHHGNAL+S + I S RNQ++SDH YESRGILHCVV
Sbjct: 61  LSQQDFLAGDSHECAYGMNAVYDHGHHGNALLSCYPILSSRNQNISDHKYESRGILHCVV 120

Query: 121 PVEGVEVHCYVIHLGLFANGRRRQTDALIQAVSTSSPPDAPLLIAGDFNDWTNQLSRTLY 180
                EVHC+VIHLGLFA  R+RQT+ALI+AV++S+  D PL+IAGDFNDW+N LS  L 
Sbjct: 121 RAPEAEVHCFVIHLGLFAGSRKRQTEALIEAVTSSAQKDEPLIIAGDFNDWSNDLSDELR 180

Query: 181 QNLGVVEVFDQPQPTARGVMQGLRRLGGLSAPIRPARTFPAMMPWLRLDRIYVRGFRVEM 240
             LGV EV+D+     RG    +R+L G    I+PARTFPA MP+LRLDRIYVRGF+VE 
Sbjct: 181 ARLGVHEVYDE-NLVKRGFGTYIRQLAGRGPKIQPARTFPAAMPFLRLDRIYVRGFKVES 239

Query: 241 AQVLKDGPWARLSDHAPIVTELQL 264
           A+VL    WA+LSDHAP+V  L+L
Sbjct: 240 AEVLHGAIWAKLSDHAPLVATLRL 263


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 652,396
Number of extensions: 27524
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 183
Effective length of database: 917,867
Effective search space: 167969661
Effective search space used: 167969661
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)