BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0212.p (601 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979848|ref|YP_001354789.1| aspartyl-tRNA synthetase [Janth... 1141 0.0 gi|152980207|ref|YP_001352950.1| lysyl-tRNA synthetase [Janthino... 74 4e-14 >gi|152979848|ref|YP_001354789.1| aspartyl-tRNA synthetase [Janthinobacterium sp. Marseille] Length = 601 Score = 1141 bits (2952), Expect = 0.0, Method: Compositional matrix adjust. Identities = 544/601 (90%), Positives = 570/601 (94%) Query: 1 MSMRTQYCGLTTEALLGQTVSLCGWVHRRRDHGGVIFIDLRDREGLVQVVCDPDRADVFK 60 MSMRT YCGLT+EALL QTVSLCGWVHRRRDHGGVIFIDLRDREGLVQVVCDPDR DVFK Sbjct: 1 MSMRTHYCGLTSEALLDQTVSLCGWVHRRRDHGGVIFIDLRDREGLVQVVCDPDRVDVFK 60 Query: 61 NAESVRNEFCLRITGLVRNRPEGTTNANLKSGKIEVLCHELEVLNPSVTPPFQLDDDSLS 120 AE+VRNEFCLRITG+VR+RPEGT+N+NL SGKIEVL HELEVLN SVTPPFQLDDD+LS Sbjct: 61 AAEAVRNEFCLRITGVVRSRPEGTSNSNLTSGKIEVLAHELEVLNASVTPPFQLDDDNLS 120 Query: 121 ETTRLTHRVLDLRRPQMQNNLRLRYKVAMEVRKFLDAQGFIDIETPMLTKSTPEGARDYL 180 ETTRLTHRVLDLRRPQMQNNLRLRYKV MEVRKFLDAQGFIDIETPMLTKSTPEGARDYL Sbjct: 121 ETTRLTHRVLDLRRPQMQNNLRLRYKVTMEVRKFLDAQGFIDIETPMLTKSTPEGARDYL 180 Query: 181 VPSRVNAGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRADRQPEFTQIDCETS 240 VPSRVNAG FFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRADRQPEFTQIDCETS Sbjct: 181 VPSRVNAGHFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRADRQPEFTQIDCETS 240 Query: 241 FLNEQEIRDLFEGMIRLVFKNALDIDLPNPFPVMDFATAMGKYGSDKPDMRVKLEFTELT 300 F+NEQEIRDLFEGMIRLVFKNAL++DLPNPFPVMD+ATAMG YGSDKPDMRVKL FT+LT Sbjct: 241 FMNEQEIRDLFEGMIRLVFKNALNVDLPNPFPVMDYATAMGLYGSDKPDMRVKLAFTDLT 300 Query: 301 DVMKDVDFKVFSGAANSEGGRVVGLRVPGGAEMPRSEIDAYTQFVAIYGAKGLAYIKVNE 360 +MKDV+FKVFSGAAN EGGRVVGLRVPGG MPRSEIDAYTQFVAIYGAKGLAYIKVNE Sbjct: 301 SIMKDVEFKVFSGAANMEGGRVVGLRVPGGGAMPRSEIDAYTQFVAIYGAKGLAYIKVNE 360 Query: 361 KAKGRDGLQSPIVKNIHDAALNAIIEKTGAQDGDLIFFGADKAKVVNDAIGALRVKIGHS 420 KAKGRDGLQSPIVKNIHD AL IIE TGA+DGDLIFFGADKAKVVNDAIGALRVK+GHS Sbjct: 361 KAKGRDGLQSPIVKNIHDEALAKIIEATGAEDGDLIFFGADKAKVVNDAIGALRVKVGHS 420 Query: 421 EFGKKNGLFDDEWRPLWVVDFPMFEYDEDGQRWVALHHPFTSPKDGHEDFISTNPGAAIA 480 +FGKK+GLFDDEWRPLWVVDFPMFE+DE+ QRW A HHPFT+PKDGHED + T+PG IA Sbjct: 421 DFGKKSGLFDDEWRPLWVVDFPMFEFDEENQRWSATHHPFTAPKDGHEDLMETDPGKCIA 480 Query: 481 KAYDMVLNGWELGGGSVRIHRADVQSKVFRALKIDDEEARLKFGFLLDALQYGAPPHGGI 540 KAYDMVLNGWELGGGSVRIHRADVQSKVFRALKI EEA+LKFGFLLDALQYGAPPHGG+ Sbjct: 481 KAYDMVLNGWELGGGSVRIHRADVQSKVFRALKIGAEEAQLKFGFLLDALQYGAPPHGGL 540 Query: 541 AFGLDRLVTMMAGAESIRDVIAFPKTQRAQCLLTHAPSEVDEKQLRELHIRLRNTEPAVK 600 AFGLDR+VTMM GAESIRDVIAFPKTQRAQCLLT APSEVDEKQLRELHIRLRN EPAVK Sbjct: 541 AFGLDRIVTMMTGAESIRDVIAFPKTQRAQCLLTQAPSEVDEKQLRELHIRLRNVEPAVK 600 Query: 601 A 601 A Sbjct: 601 A 601 >gi|152980207|ref|YP_001352950.1| lysyl-tRNA synthetase [Janthinobacterium sp. Marseille] Length = 511 Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 77/304 (25%), Positives = 135/304 (44%), Gaps = 32/304 (10%) Query: 3 MRTQYCGLTTEALLGQ--TVSLCGWVHRRRDHGG-VIFIDLRDR-----EGLVQVVCDPD 54 + +Y G T E L + TV+L G + +R+ G F L+D +G +Q+ D Sbjct: 50 LHEKYDGKTREELEAEPVTVTLAGRMMLKREAGKKAAFATLQDASGAKADGRIQIYATLD 109 Query: 55 RADVFKNAESVRNEFCL-RITGLVRNRPEGTTNANLKSGKIEVLCHELEVLNPSVTPPFQ 113 + A + + + L I G+V T K+ ++ + EL +L S+ P Sbjct: 110 LTG--EAAMAALHHYDLGDILGVV------GTLFKTKTDELTIKVTELRLLTKSLRPLPD 161 Query: 114 LDDDSLSETTRLTHRVLDL-RRPQMQNNLRLRYKVAMEVRKFLDAQGFIDIETPMLTKST 172 + T+ R +DL + + R +R+F+ F+++ETPML + Sbjct: 162 KFHGLADQETKYRQRYVDLIMNEDTRRTFKARTAAISSIRRFMAENDFMEVETPML-HTI 220 Query: 173 PEGARDYLVPSRVNA--GEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRADRQP 230 P GA + NA E F L +P+L+ + L+V FDR ++I + FR+E + P Sbjct: 221 PGGAAAKPFVTHHNALDMEMF-LRIAPELYLKRLVVGGFDRVFEINRNFRNEGVSIRHNP 279 Query: 231 EFTQIDCETSFLNEQEIRDLFEGMIRLVFKNA----------LDIDLPNPFPVMDFATAM 280 EFT ++ ++ + + + D E +IR +A ++DL PF + A+ Sbjct: 280 EFTMMEFYAAYTDYKWLMDFTEAVIRQAAIDAHGTATLTYGGRELDLAKPFHRLTIVGAI 339 Query: 281 GKYG 284 KY Sbjct: 340 NKYA 343 Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 25/140 (17%) Query: 433 WRPLWVVDFPMFEYDEDGQRWVALHHPFTSPKDGHEDFISTNPGAAIAKAYDMVLNGWEL 492 W P +++D+P+ SP D + A I + +++ + G E+ Sbjct: 391 WEPTYIIDYPVE----------------VSPLARASDTV-----AGITERFELFMVGREI 429 Query: 493 GGGSVRIHRADVQSKVFRAL----KIDDEEARLKFGFLLDALQYGAPPHGGIAFGLDRLV 548 G ++ A+ Q+ F+A DEEA + AL+YG PP GG G+DRL+ Sbjct: 430 ANGFSELNDAEDQAARFQAQVAAKDAGDEEAMYYDADYIRALEYGMPPTGGCGIGIDRLM 489 Query: 549 TMMAGAESIRDVIAFPKTQR 568 ++ + +IRDV+ FP +R Sbjct: 490 MIITDSPNIRDVLLFPHLRR 509 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.139 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,385,657 Number of extensions: 58133 Number of successful extensions: 122 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 120 Number of HSP's successfully gapped: 3 Length of query: 601 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 512 Effective length of database: 891,988 Effective search space: 456697856 Effective search space used: 456697856 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)