BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0211.p
         (211 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981269|ref|YP_001354790.1| hypothetical protein mma_3100 [...   321   3e-89

>gi|152981269|ref|YP_001354790.1| hypothetical protein mma_3100
           [Janthinobacterium sp. Marseille]
          Length = 215

 Score =  321 bits (822), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 156/205 (76%), Positives = 177/205 (86%), Gaps = 1/205 (0%)

Query: 1   MRKYFITGLLILVPLAITLWVLNLIISTMDQSLLLLPEAWRPAHWLGHNIPGLGAILTLL 60
           MRKYF+TGLLILVPLAITLWVLNLI+ TMDQSLLLLP  WRP    G  IPGLG ILTLL
Sbjct: 1   MRKYFVTGLLILVPLAITLWVLNLIVGTMDQSLLLLPARWRPEAVFGFAIPGLGTILTLL 60

Query: 61  IVFLTGLAARNFIGRRLVLLWEGLLTRIPVVKSIYSSVKQVSDTLFSPSGNAFRKAVLIQ 120
           I+FLTGLA RNFIG R+V LWE +L RIPV  +IYSSVKQVSDTLFS SGNAFRKA+LI+
Sbjct: 61  IIFLTGLATRNFIGNRVVALWESILRRIPVFNTIYSSVKQVSDTLFSSSGNAFRKALLIE 120

Query: 121 YPRQGSWTIAFLTGAPGGEVKHHLQGDFISVYVPTTPNPTSGFFLMLPRADAIELDMTVD 180
           YPR+G+WTIAF+TG PGG+V++HL GD++SVYVPTTPNPTSGFFLM+PRA+ +ELDM VD
Sbjct: 121 YPRKGAWTIAFMTGVPGGDVRNHLVGDYVSVYVPTTPNPTSGFFLMVPRAETVELDMNVD 180

Query: 181 AALKYIVSMGVVAPEMVTDKKIITD 205
            ALKYIVSMGVV PE   +KK+I D
Sbjct: 181 EALKYIVSMGVVTPEHF-EKKLIID 204


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.325    0.140    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 523,137
Number of extensions: 21928
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 132
Effective length of database: 928,958
Effective search space: 122622456
Effective search space used: 122622456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)