BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0205.p
         (430 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979892|ref|YP_001355061.1| diaminopimelate decarboxylase [...   689   0.0  

>gi|152979892|ref|YP_001355061.1| diaminopimelate decarboxylase
           [Janthinobacterium sp. Marseille]
          Length = 427

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/429 (75%), Positives = 376/429 (87%), Gaps = 3/429 (0%)

Query: 1   MSHFSYRNGALHAEQVSLQALAEQFGTPLYVYSKAALVENFSAYANACRTAGRADGAKGG 60
           MSHFSY++G L AE   L  +A QFG+P Y+YSKAALVENFSAYA+AC+  GR D     
Sbjct: 1   MSHFSYQDGVLCAENTPLTQIARQFGSPTYIYSKAALVENFSAYADACKQHGRNDET--- 57

Query: 61  ALVCYSVKSNSNLAVLNLLGKLGSGFDIVSAGELLRVVAAGGDARKVIFSGVGKGRDEMK 120
           ALVCYSVKSNSNLAVLNLLGKLGSGFDIVS GELLRV+AAGG  RKVIFSGVGK R+EM+
Sbjct: 58  ALVCYSVKSNSNLAVLNLLGKLGSGFDIVSGGELLRVLAAGGSPRKVIFSGVGKSREEMQ 117

Query: 121 LALEHDILCFNVESIPEVARLNEVAGALGKRARISLRVNPNVDAKTHPYISTGLKENKFG 180
           LAL HDILCFNVESIPE+ RLN VA  +GK+A +SLRVNPNVDAKTHPYISTGLK+NKFG
Sbjct: 118 LALSHDILCFNVESIPELHRLNAVAAEMGKKASVSLRVNPNVDAKTHPYISTGLKDNKFG 177

Query: 181 VAYEDALNCYRTAAALPHIEVVGIDCHIGSQLLDDSPLLEALDKIIDMVDALEAEGIPIH 240
           +AYED L  YR AAALP+I+VVGIDCHIGSQLLDD+PLLEA+DK+I+++D L+AEGI +H
Sbjct: 178 IAYEDTLTTYRVAAALPNIDVVGIDCHIGSQLLDDAPLLEAVDKLIELIDTLDAEGIHLH 237

Query: 241 HLDIGGGIGIRYDDEQPVAIGDYLARVFARVDAWRAKKYDGRPIQVMFEPGRSVVGNAGL 300
           HLDIGGGIGI YD++QPVA+GDYLAR+FA++DAWR +K+ G PI+V+FEPGRS+VGNAG+
Sbjct: 238 HLDIGGGIGINYDNDQPVAVGDYLARLFAKIDAWRKQKHGGAPIKVLFEPGRSIVGNAGI 297

Query: 301 LLTEVQYLKHGEEKNFAVVDAAMNDLMRPAMYEAWHGVQTVKENAGQPRIYDVVGPVCES 360
           LLTEVQY+KHGE KNFA+VDAAMNDLMRPAMYEAWHGV  VK++      YDVVGPVCES
Sbjct: 298 LLTEVQYIKHGETKNFAIVDAAMNDLMRPAMYEAWHGVLPVKQSTAAAATYDVVGPVCES 357

Query: 361 GDWLARARELAIGEGDLLALMSAGAYGMTMASNYNTRGRAAEVLVDGQQAHLVRARENPA 420
           GDWLAR+RELAI EGDLLA+MSAGAYGMTM+SNYNTRGRAAEV+VDG + HL+R RE  +
Sbjct: 358 GDWLARSRELAIEEGDLLAIMSAGAYGMTMSSNYNTRGRAAEVMVDGDKVHLIRKREAAS 417

Query: 421 DLFALEKIV 429
           DLFALE ++
Sbjct: 418 DLFALESLL 426


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 987,074
Number of extensions: 41039
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 344
Effective length of database: 903,079
Effective search space: 310659176
Effective search space used: 310659176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)