BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0200.p (391 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981617|ref|YP_001351980.1| outer membrane porin [Janthinob... 149 4e-37 gi|152981829|ref|YP_001355256.1| porin [Janthinobacterium sp. Ma... 145 5e-36 gi|152981715|ref|YP_001353752.1| porin [Janthinobacterium sp. Ma... 139 2e-34 gi|152981718|ref|YP_001352190.1| porin [Janthinobacterium sp. Ma... 137 1e-33 gi|152981709|ref|YP_001352206.1| porin [Janthinobacterium sp. Ma... 133 2e-32 >gi|152981617|ref|YP_001351980.1| outer membrane porin [Janthinobacterium sp. Marseille] Length = 364 Score = 149 bits (375), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 139/420 (33%), Positives = 191/420 (45%), Gaps = 85/420 (20%) Query: 1 MKKSLLALAVLGAFAGAAHAQSSVTIYGIVDTGVVYQSKVATATGGTGTKFSLNSGIIQG 60 MKKSLLALAVLGAFAGAA AQSSVT+YGIVD G + A G+K ++SG Sbjct: 1 MKKSLLALAVLGAFAGAASAQSSVTVYGIVDLGFAHVDDGNPA----GSKNGIDSGGQSA 56 Query: 61 SRIGFKGVEDLGGGLSAVFNLE----------------------AGFSNDTGALDDSKTS 98 SRIGFKG EDLG GL A+F LE AG +N+ G Sbjct: 57 SRIGFKGTEDLGNGLKALFQLEATLQADTGAGFGAAAAPATGFNAGVANNAGG------- 109 Query: 99 NTLFRRKSVVGL-TGGFGSVLLGRQTDFADTISAYTAVNDFG-----GWVSNS-GSGLDR 151 F R + VGL + FG+VLLGRQT AY ++ FG G +S +G+ Sbjct: 110 ---FNRFATVGLQSAAFGTVLLGRQTSVIK--DAYDQIDPFGDGGTVGAISTVFFNGVLA 164 Query: 152 LQGTRTNNSISYTTANLNGFTGNLMYGFGETAGQTSAGQSFGIGGKYDNGPLGLGINYYQ 211 R +NS Y + + GF YGFGET G T A ++G+G Y NGPL + Y+ Sbjct: 165 GDYGRISNSAKYQSNSFGGFKFGAAYGFGETPGDTGANSNYGLGLGYANGPLNVQFAYHN 224 Query: 212 SKAGSTASDTSLLGASGASSVGTTSTLAGDTAQKVLNVAASYQFGPARVYGNYSRVKQDL 271 ST ++ S+ A G K++ + A+Y FG +++G Y K + Sbjct: 225 QDR-STVANPSVQQAEG----------------KLMLLGATYDFGVVKLHGAYGDTKLE- 266 Query: 272 NTQANLTAIGVGSLTSLTNRTLARSNKADIYEIGTAYSLSPSLKLLAAVDHTRANFDGVT 331 S+ N + N Y +G + + P + + + D Sbjct: 267 --------------NSVANTEVKYRN----YMLGVSAPVGPGTIFASYTANDNRSVDNAD 308 Query: 332 NKTKLTQVSLGTDYWLSKRTDLYAFLAYTKASDMANPGVSDSTGTDGNQGAVAVGIRHKF 391 K + ++ Y LSKRT+LY + T D + G++ + VGIRHKF Sbjct: 309 AK----KFAISYSYDLSKRTNLYTGYSKTSNDDGSRIGLNAGAPVGESASIFNVGIRHKF 364 >gi|152981829|ref|YP_001355256.1| porin [Janthinobacterium sp. Marseille] Length = 363 Score = 145 bits (365), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 137/405 (33%), Positives = 189/405 (46%), Gaps = 66/405 (16%) Query: 4 SLLALAVLGAFAGAAHAQSSVTIYGIVD--TGVVYQSKVATATGGTGTKFSLNSGIIQGS 61 S+L A + +++ + AQSSVT+ GI D G + S A T ++SG + S Sbjct: 8 SVLLTASILSYSSLSRAQSSVTMEGIADGFMGSMRNSGDAARTS------KVDSGGLSTS 61 Query: 62 RIGFKGVEDLGGGLSAVFNLEAGFSNDTGALDDSKTSNTLFRRKSVVGLTGGFGSVLLGR 121 IGFKG EDLGGGL A F L A + D GA +T F R + V L+G FG ++LGR Sbjct: 62 YIGFKGFEDLGGGLKASFTLGAFYRIDDGAYGRFG-GDTFFARDANVALSGSFGKLMLGR 120 Query: 122 QTDFADTISAYT--AVND---FGGWVSNSGSGLDRLQGT--RTN----NSISYTTANLNG 170 T T+ Y V D V ++ G + GT RT+ NSI+YT+ G Sbjct: 121 MTP-PTTLPLYMFNPVEDSFSLSPLVLHTIVGTNVFPGTFGRTDSAWSNSIAYTSPTFAG 179 Query: 171 FTGNLMYGFGETAGQTSAGQSFGIGGKYDNGPLGLGINYYQSKAGSTASDTSLLGASGAS 230 T NL Y FGE AG +S G Y NGPL LG+ Y+ + G+ + + +G S Sbjct: 180 LTFNLHYQFGEAAGNSSKNNK-GANALYQNGPLALGLAYHDVQVGNPVDNP--IVPNGPS 236 Query: 231 SVGTTSTLAGD----TAQKVLNVAASYQFGPARVYGNYSRVKQDLNTQANLTAIGVGSLT 286 + + G T QK+ V SY F + + Y R D++ + +G+ Sbjct: 237 VMLSVPVPGGPNLVATRQKLAFVGGSYDFSYLKFFATYDRATHDVDLKDQTGTLGLS--- 293 Query: 287 SLTNRTLARSNKADIYEIGTAYSLSPSLKLLAAVDHTRANFDGVTNKTKLTQVSLGTDYW 346 +G KLL AV T+ + + K T VS+G DY+ Sbjct: 294 ---------------VPLGNG-------KLLGAVAQTKRE-SALFSDVKRTTVSVGYDYF 330 Query: 347 LSKRTDLYAFLAYTKASDMANPGVSDSTGTDGNQGAVAVGIRHKF 391 LSKRTDLY+FL K +D AN VS VAVG+RH+F Sbjct: 331 LSKRTDLYSFLMNDKTTDYAN-AVS-----------VAVGMRHRF 363 >gi|152981715|ref|YP_001353752.1| porin [Janthinobacterium sp. Marseille] Length = 327 Score = 139 bits (351), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 127/393 (32%), Positives = 184/393 (46%), Gaps = 68/393 (17%) Query: 1 MKKSLLALAVLGAFAGAAHAQSSVTIYGIVDTGVVYQSKVATATGGTGTKFSLNSGIIQG 60 MKK+L A ++L + AGA + QSSVT+YG+VD G+ K+ A G GT ++SG Sbjct: 1 MKKTLFAFSMLASMAGATYGQSSVTVYGVVDLGL----KIENA--GNGTVTGIDSGNQSV 54 Query: 61 SRIGFKGVEDLGGGLSAVFNLEAGFSNDTGALDDSKTSNTLFRRKSVVGLTGGFGSVLLG 120 SR+GFKG EDLG GL A F LEAGF+ D+G+ D + F R+S V L GGFG V LG Sbjct: 55 SRVGFKGTEDLGNGLKANFVLEAGFNADSGSQSD---ATRFFNRQSYVSLAGGFGEVKLG 111 Query: 121 RQTDFADTISAYTAVNDFGGWVSNSGSGLDRLQGTRTNNSISYTTANLNGFTGNLMYGFG 180 R T SA + F ++ + G R +N+++Y+ A NG G Y FG Sbjct: 112 RVQTMVFTNSA--VFDPFADTLAGDSVRIFNYGGNRIDNTVNYSFAAKNGINGQAAYSFG 169 Query: 181 ETAGQTSAGQSFGIGGKYDNGPLGLGINYYQSK--AGSTASDTSLLGASGASSVGTTSTL 238 E AG TSA ++ Y +GPL + Y +K G+ ++ T+L+G Sbjct: 170 EVAGNTSASRTVAGAIGYASGPLATVLTYQDTKDVTGNDSAKTTLIG------------- 216 Query: 239 AGDTAQKVLNVAASYQFGPARVYGNYSRVKQDLNTQANLTAIGVGSLTSLTNRTLARSNK 298 +Y FG + + Y+ K G G+L T L Sbjct: 217 ------------GNYNFGLLQPFIAYAVNK------------GFGTLD--TRDAL----- 245 Query: 299 ADIYEIGTAYSLSPSLKLLAAVDHTRANFDGVTNKTKLTQVSLGTDYWLSKRTDLYAFLA 358 +G +L+ + ++ + R D V + Q+++G + LS RT+LY A Sbjct: 246 -----LGLKINLTSADTIMTSYMQKR---DKVIDNADAKQIAIGYTHNLSVRTNLYTSWA 297 Query: 359 YTKASDMANPGVSDSTGTDGNQGAVAVGIRHKF 391 D A V+ + TD +GIRHKF Sbjct: 298 RLSNDDNAAYRVTSAGKTD---KLFNIGIRHKF 327 >gi|152981718|ref|YP_001352190.1| porin [Janthinobacterium sp. Marseille] Length = 364 Score = 137 bits (345), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 130/407 (31%), Positives = 181/407 (44%), Gaps = 69/407 (16%) Query: 3 KSLLALAVLGA-FAGAAHAQSSVTIYGIVDTGVVYQSKVATATGGTGTKFSLNSGIIQGS 61 + L +A LGA A A AQ+SV + G+VD + +G G +NSG + S Sbjct: 9 RKLQCVAALGAACALPAMAQTSVQVTGLVDNFI----GSVKYSGDAGRSSVVNSGGMTTS 64 Query: 62 RIGFKGVEDLGGGLSAVFNLEAGFSNDTGALDDSKTSNTLFRRKSVVGLTGGFGSVLLGR 121 GFKG EDLGGGL A FNL + F DTG + T F R + VGL G FG + LGR Sbjct: 65 WFGFKGTEDLGGGLKAKFNLTSFFRADTGGAGRFDGNETFFSRDANVGLIGKFGEISLGR 124 Query: 122 QTDFADTISAYTAVNDFGGWVSNSG----SGLDRLQGTRTNNSIS----------YTTAN 167 D A N FG S + + G+R +NS++ YTT N Sbjct: 125 --DLAPHFLPSILFNPFGDSFQLSPLMLHADVPLFNGSRWSNSVAADTGWSNEIIYTTPN 182 Query: 168 LNGFTGNLMYGFGETAGQTSAGQSFGIGGKYDNGPLGLGINYYQSKAGSTASDTSLLGAS 227 + G N+ Y FGE AGQ S + G+ Y NGPLGL Y + + + T Sbjct: 183 MAGLKANIHYQFGEVAGQ-SGKNNVGMNLLYSNGPLGLAAYYQKIRVNNPLEQTP----- 236 Query: 228 GASSVGTTSTLAG---DTAQKVLNVAASYQFGPARVYGNYSRVKQDLNTQANLTAIGVGS 284 +V +TL G Q V SY F A+++ Y++ D++ Q Sbjct: 237 --GNVLPAATLLGGLTPARQTGWFVGGSYDFAVAKLFATYNQTSHDVDLQ---------- 284 Query: 285 LTSLTNRTLARSNKADIYEIGTAYSLSPSLKLLAAVDHTRANFDGVTNKTKLTQVSLGTD 344 +RT+ ++GT+ L +LA+ +T+ + + K S G D Sbjct: 285 -----DRTV---------QLGTSIPLGQG-AILASWANTKRDGAAIGQDLKRNTASFGYD 329 Query: 345 YWLSKRTDLYAFLAYTKASDMANPGVSDSTGTDGNQGAVAVGIRHKF 391 Y +SKRTDLYA Y K + +TG VA+GIRH+F Sbjct: 330 YNISKRTDLYAVYMYDKIT-------QQNTGN-----TVALGIRHRF 364 >gi|152981709|ref|YP_001352206.1| porin [Janthinobacterium sp. Marseille] Length = 364 Score = 133 bits (334), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 131/415 (31%), Positives = 189/415 (45%), Gaps = 80/415 (19%) Query: 1 MKKSLLALAVLGAFAGAAHAQSSVTIYGIVDT--GVVYQSKVATATGGTGTKFSLNSGII 58 +KK L +A+ A A A AQSSV + G+VDT G + QS G G S+N G + Sbjct: 6 LKKLQLVMALGSAIALPAMAQSSVQVTGVVDTYLGSMKQS------GDAGRTSSVNGGGM 59 Query: 59 QGSRIGFKGVEDLGGGLSAVFNLEAGFSNDTGALDDSKTSNTLFRRKSVVGLTGGFGSVL 118 S GFKG EDLGGGL A FNL + +D GA+ + T F R + VGL G FG++ Sbjct: 60 TTSWFGFKGTEDLGGGLKATFNLTSYIRSDIGAIGRFNGNETFFSRDANVGLRGKFGAIS 119 Query: 119 LGRQTDFADTISAYTAVNDFG--------------------GWVSNSGSGLDRLQGTRTN 158 LGR D + N FG GW +NS +G T + Sbjct: 120 LGR--DLSPNFLPSVISNPFGDSFQFSPLILHKDVPLFNASGW-TNSVAG-----DTGWS 171 Query: 159 NSISYTTANLNGFTGNLMYGFGETAGQTSAGQSFGIGGK--YDNGPLGLGINYYQSKAGS 216 N I YTT ++ G ++ Y FGE AG++ +GG Y NGPL L YYQ + Sbjct: 172 NEIMYTTPDIGGLKASINYQFGEVAGKSGKNN---VGGNLLYFNGPLAL-TAYYQKVQVN 227 Query: 217 TASDTSLLGASGASSVGTTSTLAGDTAQKVLNVAASYQFGPARVYGNYSRVKQDLNTQAN 276 D S A+++ S + Q V +Y F A+++ +Y++ D++ Sbjct: 228 NPMDLSPNNVQPATNIPFASGMTA-ARQTAWFVGGAYDFSIAKLFASYNQSTHDID---- 282 Query: 277 LTAIGVGSLTSLTNRTLARSNKADIYEIGTAYSLSPSLKLLAAVDHTRANFDGVTNKTKL 336 L ++T +++GT+ L +LA+ +T+ + V + K Sbjct: 283 -----------LKDKT---------FQLGTSIPLGQG-AILASWANTKRDGVAVGTELKR 321 Query: 337 TQVSLGTDYWLSKRTDLYAFLAYTKASDMANPGVSDSTGTDGNQGAVAVGIRHKF 391 S G DY LSKRTD+Y+ Y K + + GN + AVGIRH+F Sbjct: 322 NTASFGYDYNLSKRTDIYSIYMYDKITQQ----------SAGN--SFAVGIRHRF 364 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.312 0.130 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 825,316 Number of extensions: 35237 Number of successful extensions: 145 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 107 Number of HSP's successfully gapped: 9 Length of query: 391 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 306 Effective length of database: 906,776 Effective search space: 277473456 Effective search space used: 277473456 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)