BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0198.p
         (458 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981245|ref|YP_001354904.1| ATP-dependent protease ATP-bind...   773   0.0  
gi|152980700|ref|YP_001353222.1| ATP-dependent protease ATP-bind...    94   2e-20

>gi|152981245|ref|YP_001354904.1| ATP-dependent protease ATP-binding
           subunit HslU [Janthinobacterium sp. Marseille]
          Length = 449

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/449 (85%), Positives = 408/449 (90%), Gaps = 1/449 (0%)

Query: 11  MNMTPKEIVSELDKHVVGQARAKRAVAIALRNRWRRQQIEEPLRHEITPKNILMIGPTGV 70
           MNMTPKEIVSELDKHVVGQ RAKRAVAIALRNRWRRQQ+ EPLRHEITPKNILMIGPTGV
Sbjct: 1   MNMTPKEIVSELDKHVVGQGRAKRAVAIALRNRWRRQQVAEPLRHEITPKNILMIGPTGV 60

Query: 71  GKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLVDIGIKQTRELETRKVRT 130
           GKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDL+DIGIKQTRELETRKVR 
Sbjct: 61  GKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIKQTRELETRKVRA 120

Query: 131 RAEDAAEDRILDVLLPPARDFGFTPDGSHAGGEKDDK-NTTRQTFRKRLREGALDDREIE 189
           RAEDAAEDRI+D+L+PPARDFGF P  S          N TRQTFRKRLREG LDD EIE
Sbjct: 121 RAEDAAEDRIIDILVPPARDFGFHPSSSTGSDTAPSTGNATRQTFRKRLREGTLDDTEIE 180

Query: 190 LELNDAAPSMEIMAPPGMEEMTEQIKSMFSGLGNQRKKARKIKIKEAMKLLIEEEAAKLV 249
           +EL +A PSMEIMAPPGMEEMTEQIKSMFSG+G  RKK RK+KIKEAMKLLIEEEA KLV
Sbjct: 181 IELAEAGPSMEIMAPPGMEEMTEQIKSMFSGVGGTRKKTRKVKIKEAMKLLIEEEAGKLV 240

Query: 250 NEEELKQKAIANVEQNGIVFLDEIDKIATRSQNGNADVSRAGVQRDLLPLVEGTTVNTKY 309
           NE+ELKQKAI NVEQNGIVFLDEIDKIATRS+NG ADVSRAGVQRDLLPLVEGTTVNTKY
Sbjct: 241 NEDELKQKAITNVEQNGIVFLDEIDKIATRSENGGADVSRAGVQRDLLPLVEGTTVNTKY 300

Query: 310 GMIKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSIADFERILTGTDACLTKQ 369
           GMIKTDHILFIASGAFHL+KPSDLIPELQGRFPIRVEL+SLSIADFERILT TDACLT+Q
Sbjct: 301 GMIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSIADFERILTSTDACLTRQ 360

Query: 370 YEALLATEGVKIAFADSGIKRLAEISHTVNEKTENIGARRLYTVMEKLLEEISFTAGEAG 429
           YEALL TEGVKI FA  GIKR+AEI+++VNEKTENIGARRLYTVMEKLLEEISF+A +  
Sbjct: 361 YEALLGTEGVKIEFAPDGIKRMAEIAYSVNEKTENIGARRLYTVMEKLLEEISFSATDDP 420

Query: 430 VEGLEIDADYVNERLGELAVDEDMSRYVL 458
            + L ID  YV+ERLG L+V+ED+SRYVL
Sbjct: 421 DQTLVIDGVYVDERLGALSVNEDLSRYVL 449


>gi|152980700|ref|YP_001353222.1| ATP-dependent protease ATP-binding
           subunit ClpX [Janthinobacterium sp. Marseille]
          Length = 422

 Score = 93.6 bits (231), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 69/107 (64%), Gaps = 13/107 (12%)

Query: 14  TPKEIVSELDKHVVGQARAKRAVAIALRNRWRRQQIEEPLRH-------EITPKNILMIG 66
           TP+E+   LD++V+GQ  AKR +++A+ N ++R      L+H       E+   NIL++G
Sbjct: 67  TPQELCELLDQYVIGQNPAKRILSVAVYNHYKR------LKHLGKKDDVELAKSNILLVG 120

Query: 67  PTGVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLV 113
           PTG GKT +A+ LA+  D PF+  +AT  TE GYVG DV+ II+ L+
Sbjct: 121 PTGSGKTLLAQTLARTLDVPFVIADATTLTEAGYVGEDVENIIQKLL 167


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.134    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 949,289
Number of extensions: 38347
Number of successful extensions: 192
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 2
Length of query: 458
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 372
Effective length of database: 903,079
Effective search space: 335945388
Effective search space used: 335945388
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)