BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0190.p (241 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino a... 400 e-113 gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino a... 251 2e-68 gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino a... 211 5e-56 gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC tran... 160 6e-41 gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino a... 153 9e-39 >gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 400 bits (1029), Expect = e-113, Method: Compositional matrix adjust. Identities = 195/241 (80%), Positives = 218/241 (90%) Query: 1 MTTNILKVEQLSVAYGGIQAVKGIALEVNEGELVTLIGANGAGKTTTLKAITGTLPSSKV 60 MT +LK+ L VAYGGI+AVKG+ LEV++GEL+TLIGANGAGKTTTLKAITGTLP+ +V Sbjct: 1 MTDTVLKISGLKVAYGGIEAVKGVDLEVHKGELITLIGANGAGKTTTLKAITGTLPNCRV 60 Query: 61 DGHIYYLGHPLKGKKSFELVKDKLAMVPEGRGVFTRMSIHENLLMGAYTSNDKGQIAADI 120 +GHI Y G P+KG SFELV+ KLAMVPEGRGVFTRMSI ENLLMGA+T +DK IAADI Sbjct: 61 EGHIEYAGQPIKGLHSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRDDKDGIAADI 120 Query: 121 DRWFEVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIF 180 D+WF VFPRLKERAAQMAGTLSGGEQQMLAMARALMSHP+LLLLDEPSMGLSPIMVEKIF Sbjct: 121 DKWFGVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPELLLLDEPSMGLSPIMVEKIF 180 Query: 181 EVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMNGQAKQMLDDPRVKAAYLGE 240 EVIR VSAQGITILLVEQNAKLAL+AA+R YVMESGL+TM+G A+QML DP+V+ AYLGE Sbjct: 181 EVIRTVSAQGITILLVEQNAKLALQAANRAYVMESGLVTMHGDAQQMLSDPKVREAYLGE 240 Query: 241 G 241 G Sbjct: 241 G 241 >gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 249 Score = 251 bits (642), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 119/237 (50%), Positives = 171/237 (72%), Gaps = 2/237 (0%) Query: 3 TNILKVEQLSVAYGGIQAVKGIALEVNEGELVTLIGANGAGKTTTLKAITGTLPSSKVDG 62 +N+LK+E+++V YG + I+LEV+EGE+VTLIGANGAGK+TTL+AI G P + G Sbjct: 14 SNMLKIEEITVRYGATTGINKISLEVHEGEIVTLIGANGAGKSTTLRAINGLEPLAH--G 71 Query: 63 HIYYLGHPLKGKKSFELVKDKLAMVPEGRGVFTRMSIHENLLMGAYTSNDKGQIAADIDR 122 I GH + G E++ ++ PEGR VF ++++ EN+ MGAY DK ++ D++R Sbjct: 72 SIRMNGHLVSGASPAEVIDHGISHCPEGRRVFPQLTVRENMEMGAYRRKDKAKVRDDMER 131 Query: 123 WFEVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEV 182 F+ FPRL+ER Q+AGTLSGGEQQMLA+ARALMS P+L++ DEPS+GL+P +VE+IF + Sbjct: 132 MFDKFPRLRERVQQVAGTLSGGEQQMLAIARALMSRPRLVMFDEPSLGLAPNIVEQIFSL 191 Query: 183 IRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMNGQAKQMLDDPRVKAAYLG 239 IR + ++G T+L+VEQNA AL RGY++E+G I G + +M +P ++ AYLG Sbjct: 192 IREIRSEGTTVLIVEQNAYAALAMCDRGYLLENGHIVTQGSSAEMRANPEIRRAYLG 248 >gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 235 Score = 211 bits (536), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 100/234 (42%), Positives = 159/234 (67%), Gaps = 2/234 (0%) Query: 6 LKVEQLSVAYGGIQAVKGIALEVNEGELVTLIGANGAGKTTTLKAITGTLPSSKVDGHIY 65 L V+ L+ Y + + +++EV G++ ++GANGAGK+T +++I G P + G I Sbjct: 4 LIVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQ--GEIL 61 Query: 66 YLGHPLKGKKSFELVKDKLAMVPEGRGVFTRMSIHENLLMGAYTSNDKGQIAADIDRWFE 125 + G L G+K+ ++ ++ +PEGR VF RM++ ENL +GA+ + + + R +E Sbjct: 62 WGGKNLAGEKTHNIIASGISCIPEGRKVFPRMTVAENLALGAFLESSSTVVRDRLARVYE 121 Query: 126 VFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEVIRN 185 +FPRLKERAAQ+AGT+SGGEQ M+++ R LM+ PKLL++DEPS+GLSP+ V++ F+VI+ Sbjct: 122 IFPRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPKLLVIDEPSLGLSPLYVKENFKVIKQ 181 Query: 186 VSAQGITILLVEQNAKLALEAAHRGYVMESGLITMNGQAKQMLDDPRVKAAYLG 239 ++A GIT+LLVEQNA+ L +H GYV+ G + G A+ + + V++AY G Sbjct: 182 INALGITVLLVEQNARQTLAISHYGYVLSQGRVMAQGTAEALSSNDDVRSAYFG 235 >gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC transporter protein [Janthinobacterium sp. Marseille] Length = 231 Score = 160 bits (405), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 85/237 (35%), Positives = 143/237 (60%), Gaps = 8/237 (3%) Query: 3 TNILKVEQLSVAYGGIQAVKGIALEVNEGELVTLIGANGAGKTTTLKAITGTLPSSKVDG 62 + +L+++ L YG + GI + + GE+V+L+G NGAG++TT+KA G + ++ G Sbjct: 2 SALLEIKNLHAFYGKSHVLHGIDITIQSGEIVSLLGRNGAGRSTTVKAAMGMVAAT---G 58 Query: 63 HIYYLGHPLKGKKSFELVKDKLAMVPEGRGVFTRMSIHENLLMGAYTSNDKGQIAADIDR 122 I + G + G ++ + + L V E R +F +S+ +NL++GA K + +AD Sbjct: 59 TIRFKGKEILGLPTYRIARQGLGYVAESREIFPTLSVAQNLVLGA---QAKSRWSAD--D 113 Query: 123 WFEVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEV 182 + +FPRL+ER AG LSGGEQQMLA+ R LM P+L+++DEP+ GL+P MV + Sbjct: 114 MYRLFPRLQERQHVQAGVLSGGEQQMLALCRTLMGDPELIMIDEPTEGLAPQMVALVANF 173 Query: 183 IRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMNGQAKQMLDDPRVKAAYLG 239 ++ + +G+++LL+EQ +AL+ + R YVM G + G + + D V+ +LG Sbjct: 174 LQELVQRGVSVLLIEQKLAIALKISQRVYVMGHGQVVFEGSPQDLQADAAVRQEWLG 230 >gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 232 Score = 153 bits (387), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 91/228 (39%), Positives = 138/228 (60%), Gaps = 6/228 (2%) Query: 5 ILKVEQLSVAYGGIQAVKGIALEVNEGELVTLIGANGAGKTTTLKAITGTLPSSKVDGHI 64 +L+V QL+ YG ++GI+L V +G+ ++L+G NG GKTT LK + G LP + G++ Sbjct: 1 MLQVNQLNQYYGAAHTLRGISLSVEKGKCLSLLGRNGVGKTTLLKCLMGVLPVAA--GNV 58 Query: 65 YYLGHPLKGKKSFELVKDKLAMVPEGRGVFTRMSIHENLLMGAYTSNDKGQIAADID-RW 123 G + K + +A VP+GR +F R+++ ENLLMG T + G+ A+ I Sbjct: 59 SLDGRDITKLKPHQRAALGIAYVPQGREIFARLTVEENLLMGMATKS--GKKASVIKGEV 116 Query: 124 FEVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEVI 183 +E+FP LKE + G LSGG+QQ LA+ARAL++ PKL++LDEP+ G+ P +++ I VI Sbjct: 117 YELFPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVI 176 Query: 184 RNVSAQG-ITILLVEQNAKLALEAAHRGYVMESGLITMNGQAKQMLDD 230 + +G I ILL EQ A E A V+ G + +G ++M DD Sbjct: 177 SLLRERGDIGILLCEQYFDFARELADTFVVLSRGEVVASGSQQEMDDD 224 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.134 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 532,361 Number of extensions: 21214 Number of successful extensions: 262 Number of sequences better than 1.0e-08: 53 Number of HSP's gapped: 208 Number of HSP's successfully gapped: 55 Length of query: 241 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 160 Effective length of database: 921,564 Effective search space: 147450240 Effective search space used: 147450240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)