BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0188.p (404 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980782|ref|YP_001354237.1| ABC-type branched-chain amino a... 620 e-179 gi|152981704|ref|YP_001352348.1| ABC-type branched-chain amino a... 133 2e-32 gi|152981502|ref|YP_001352470.1| ABC-type branched-chain amino a... 120 1e-28 gi|152980464|ref|YP_001352469.1| branched-chain amino acid trans... 72 7e-14 gi|152981369|ref|YP_001353498.1| ABC-type branched-chain amino a... 68 8e-13 >gi|152980782|ref|YP_001354237.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 404 Score = 620 bits (1598), Expect = e-179, Method: Compositional matrix adjust. Identities = 311/399 (77%), Positives = 348/399 (87%) Query: 6 FDMKRNPRQAQLSLLALLALMIVFPIVAQQFGNSWVRIMDMALLYIMLALGLNVVVGFAG 65 FD K NPR+A LL +LA+ +VFP +AQ FGNSWVRIMD ALLYIMLALGLNVVVGFAG Sbjct: 5 FDTKNNPRKAYSGLLLILAIALVFPFIAQNFGNSWVRIMDFALLYIMLALGLNVVVGFAG 64 Query: 66 LLDLGYIAFYAIGAYTAGLLASPQFAAVIESFINTYPSIGNFLVWLCGPQIVQNGIHLSL 125 LLDLGYIAFYAIGAY LLASPQFA V+ESF+N YP+IG L+W+ GP+I QNGIHLSL Sbjct: 65 LLDLGYIAFYAIGAYLTALLASPQFAVVLESFVNQYPAIGETLLWVFGPEIAQNGIHLSL 124 Query: 126 WLIVPISGVLAAIFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNITNGPQG 185 W IVP++ ++A FGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLN PVNITNGPQG Sbjct: 125 WAIVPLAALVAGFFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNGPVNITNGPQG 184 Query: 186 INLIDPIRVFGVSLAGEPGSGSMVKVLGMSLPSVNAYYYLFLVLCIFVIFFSTRLQDSRL 245 IN+IDPIR+FGVSL GE GS + V + ++PSVNAYY+LFL LCI +IF S RLQ+SRL Sbjct: 185 INMIDPIRIFGVSLNGEAGSRATVMIGDYAMPSVNAYYFLFLFLCIAIIFISVRLQNSRL 244 Query: 246 GRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMFGAFQGFVSPESFSLTES 305 GRA+VAIREDEIAAKAMGINTRNVKLLAFAMGASFGG+AGAMF +FQGFVSPESFSLTES Sbjct: 245 GRAFVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGIAGAMFASFQGFVSPESFSLTES 304 Query: 306 IAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEPLQMAIFGRVWIDAEVLRQLLYG 365 IAVLAMVVLGG+GHIPGVVLGG+ILAALPEVLRHVVEPLQ ++FG V IDAEVLRQLLYG Sbjct: 305 IAVLAMVVLGGMGHIPGVVLGGIILAALPEVLRHVVEPLQQSLFGEVLIDAEVLRQLLYG 364 Query: 366 LAMVVIMLTRPAGLWPSPRHEDRPEVDHTKVGTTGEVKA 404 LAMV+IML RP+GLWPSP+ EDRP D+ + +V A Sbjct: 365 LAMVLIMLYRPSGLWPSPKSEDRPTADNDTAKKSTDVVA 403 >gi|152981704|ref|YP_001352348.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 387 Score = 133 bits (335), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 104/352 (29%), Positives = 174/352 (49%), Gaps = 60/352 (17%) Query: 31 IVAQQFGNSWVRIMDMA-LLYIMLALGLNVVVGFAGLLDLGYIAFYAIGAYTAGLLASPQ 89 +VA + + +V +M A LLY +GL + GF G+ + AF+ IG+YT +LA+ Sbjct: 83 LVAAFYDSHFVLMMICAVLLYSTACMGLTLQFGFVGVANFAGAAFFGIGSYTTAVLATH- 141 Query: 90 FAAVIESFINTYPSIGNFLVWLCGPQIVQNGIHLSLWLIVPISGVLAAIFGALLGAPTLK 149 P + N + ISGV+AAI G++L P L+ Sbjct: 142 ---------TGLPQLAN----------------------IAISGVVAAIIGSVLILPVLR 170 Query: 150 LRGDYLAIVTLGFGEIIRIFMNNLNAPVNITNGPQGINLIDPIRVFGVSLAGEPGSGSMV 209 RG Y A+VT+ FG + + F+ +N ++ GPQG+ +V G+ L G + Sbjct: 171 TRGHYAALVTIAFGILFKTFIE-VN---DVLGGPQGL------QVPGMQLFGHAFNEGF- 219 Query: 210 KVLGMSLPSVNAYYYLFLVLCIFVIFFSTRLQDSRLGRAWVAIREDEIAAKAMGINTRNV 269 + G+ +Y L LV+C L+ S +G + +R DE AA G++ Sbjct: 220 TLFGIEFSFYVSYVLLSLVICAGAFVLVKALERSWVGLSMDVVRTDETAAATFGLHIARW 279 Query: 270 KLLAFAMGASFGGVAGAMFGAFQGFVSPESFSLTESIAVLAMVVLGGIGHIPGVVLGGVI 329 K++AF MG F G+AG+++G GF++P +F+ ++S+ ++++ +LGG+G+ G++ +I Sbjct: 280 KVIAFTMGNLFAGIAGSVYGMMVGFIAPNNFTFSDSLLLVSIAILGGLGNPVGLIPAAII 339 Query: 330 LAALPEVLRHVVEPLQMAIFGRVWIDAEVLRQLLYGLAMVVIMLTRPAGLWP 381 + LPE L+ + E R LLY ++ I+L RP GL P Sbjct: 340 VLMLPEKLQFIQE----------------YRVLLYAALVIAILLFRPEGLLP 375 >gi|152981502|ref|YP_001352470.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 346 Score = 120 bits (301), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 102/355 (28%), Positives = 176/355 (49%), Gaps = 56/355 (15%) Query: 49 LYIMLALGLNVVVGFAGLLDLGYIAFYAIGAYTAGLLASPQFAAVIESFINTYPSIG-NF 107 ++++ A+ LN+++G+ G L LG++AF+ +GAYT LL S+G + Sbjct: 35 IFVIAAISLNLLLGYTGQLSLGHVAFFGLGAYTTSLL-----------------SLGFDV 77 Query: 108 LVW-LCGPQIVQNGIHLSLWLIVPISGVLAAIFGALLGAPTLKLRGDYLAIVTLGFGEII 166 +W + P +V +W+ AAI G LLG ++RG Y IVT+ F +++ Sbjct: 78 TLWGMTEPLVVTAK---PVWVSFACGIAFAAIAGWLLGKLAFRVRGAYFVIVTISFAQVM 134 Query: 167 RIFMNNLNAPVNITNGPQGINLIDPIRVFGVSLAGEPGSGSMVKVLGMSLPSVNAYYYLF 226 R M +LN V++T GP +N I + ++ PG G + L S + Y+L Sbjct: 135 R--MVSLNW-VDLTEGPMALNNIPALTMW------VPGEGVI------DLASKLSTYWLV 179 Query: 227 LVLCIFVIFFSTRLQDSRLGRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGA 286 L + + + SR+GRA +A+RE+E A+++GI + +A A G AG Sbjct: 180 LAVAVVSYLLVAAIVHSRIGRAMIALRENETLARSVGIRVTHYLGIATIFAAGIAGAAGG 239 Query: 287 MFGAFQGFVSPESFSLTESIAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEPLQM 346 ++ + P+ F +I ++ MV++GG G + G V+GG++ LPEVLR VV P Sbjct: 240 LYAHTVRIIDPDVFMFMFTIMMVIMVIVGGKGTLAGPVVGGLLFGLLPEVLRGVVSP--- 296 Query: 347 AIFGRVWIDAEVLRQLLYGLAMVVIMLTRPAGLWPSP-----RHEDRPEVDHTKV 396 ++ ++YG+ M+ +++ P G+ PS R+ + + T V Sbjct: 297 -----------EIQWMIYGVLMIAVLVFMPKGVVPSAGNLLRRYSAKSMSEQTPV 340 >gi|152980464|ref|YP_001352469.1| branched-chain amino acid transport system permease protein [Janthinobacterium sp. Marseille] Length = 290 Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 83/158 (52%), Gaps = 17/158 (10%) Query: 223 YYLFLVLCIFVIFFSTRLQDSRLGRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGG 282 + L L + VIF+ ++ SRLG A A +D+ AAK +G+N +V L FA+G+ Sbjct: 143 FVLVTALALLVIFY-LLIERSRLGLAMRATFQDKDAAKIVGVNVSHVYTLTFALGSCLAS 201 Query: 283 VAGAMFGAFQGFVSPESFSLTESIAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVE 342 VAGA+ FV + S+ A+V+LGG+G++PG LGG ILA + E Sbjct: 202 VAGALLAPV--FVVTPTMGDLASLKAFAIVILGGLGNLPGAALGGFILAIVEE------- 252 Query: 343 PLQMAIFGRVWIDAEVLRQLLYGLAMVVIMLTRPAGLW 380 FG +I + R L L ++ +M+ RP GL+ Sbjct: 253 ------FGAGYI-STAYRDALGFLVILAVMIFRPQGLF 283 >gi|152981369|ref|YP_001353498.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 365 Score = 68.2 bits (165), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 94/367 (25%), Positives = 154/367 (41%), Gaps = 57/367 (15%) Query: 19 LLALLALM-IVFPI-VAQQFGNSWVRIMDMALLYIMLALGLNVVVGFAGLLDLGYIAFYA 76 +LALL +M + FP A + + ++ + Y M AL L++V G+ G+L LG+ F+A Sbjct: 24 VLALLPIMNLCFPADHALHISSYTIALVGKFMCYAMAALALDLVWGYTGILSLGHGVFFA 83 Query: 77 IGAYTAG--LLASPQFAAVIESFINTYPSIGNFLVWLCGPQIVQNGIHL--SLWLIVPIS 132 +G Y G L+ S V +S P FL W P H ++ L+V + Sbjct: 84 LGGYAHGMYLMRSIGRDGVYQS---NLPDFMVFLNWKEYPWYWWMTEHFWFAMLLVVLVP 140 Query: 133 GVLAAIFGALLGAPTLKLRGDYLAIVT--LGFGEIIRIFMNNLNAPVNITNGPQGINLID 190 G+LA IFG A +++G Y +I+T + F ++ F N+ Sbjct: 141 GLLAFIFGYF--AFRSRIKGVYFSIITQAMTFAFMLLFFRND------------------ 180 Query: 191 PIRVFGVSLAGEPGSGSMVKVLGMSL--PSVNAYYYLFLVLCIFVIFFSTR-LQDSRLGR 247 G G ++LG ++ PS A YL + + F R + S+LGR Sbjct: 181 ------TGFGGNNGFTDFKRILGFTITDPSTKAVLYLVTLAFLLAALFVCRAIVTSKLGR 234 Query: 248 AWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMFGAFQGFVSPESFSLTESIA 307 +R+ E +G N KL + + A G+AGA++ G ++P S SI Sbjct: 235 VLQGVRDSESRLMFIGYNPLWFKLFVWTLSAVVCGIAGALYVPQVGIINPSEMSPANSIE 294 Query: 308 VLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEPLQMAIFGRVWIDAEVLRQLLYGLA 367 ++ +GG G + G ++G + L + W A LY L Sbjct: 295 MVIWAAVGGRGSLLGPIIGAFTVNGL-----------------KSWFTAAFPDLWLYALG 337 Query: 368 MVVIMLT 374 ++ I +T Sbjct: 338 LIFIFVT 344 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.328 0.143 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 877,139 Number of extensions: 35843 Number of successful extensions: 234 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 226 Number of HSP's successfully gapped: 10 Length of query: 404 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 319 Effective length of database: 906,776 Effective search space: 289261544 Effective search space used: 289261544 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)