BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0184.p (378 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981349|ref|YP_001352355.1| ABC-type branched-chain amino a... 322 3e-89 gi|152981352|ref|YP_001354956.1| ABC-type branched-chain amino a... 321 4e-89 gi|152981482|ref|YP_001352346.1| ABC-type branched-chain amino a... 123 2e-29 gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino a... 81 8e-17 gi|152980080|ref|YP_001353239.1| ABC transporter leu/Ile/val-bin... 66 3e-12 >gi|152981349|ref|YP_001352355.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 381 Score = 322 bits (825), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 179/370 (48%), Positives = 234/370 (63%), Gaps = 4/370 (1%) Query: 10 IIAASLALIPAFAMAQETQVVKIGFSSPLTGPQASAGKDNQGGLMMAVERLNAQPITVGG 69 + A L + +AQE Q+VKIG P+TG A GKDN+ G +AVE LNA+ + + G Sbjct: 10 LTGAVLLALAGSTLAQE-QIVKIGHVGPVTGTDAHMGKDNENGARLAVEELNAKGVVING 68 Query: 70 KKIKFEVLAEDDQADPKQGVAVAQKLADQGVKAIVGPYNSGVTIPASRVYNDAGIV-VAT 128 KK+K + + EDD ADPKQ A A KL D V ++G NSG TIPASR+Y +AGIV ++ Sbjct: 69 KKVKLQYMPEDDAADPKQATAAATKLVDSNVAVVIGHLNSGATIPASRIYANAGIVQISP 128 Query: 129 VASNPKITQQGFATLFRVAASDSQLGGKMALYAAKELKLKRVAVIDDRTAYGQGLAEEFA 188 +++PK TQQGF T FRV A+D+QLG + YA K L K VAVIDDRTAYGQG+AEEFA Sbjct: 129 SSTSPKYTQQGFKTAFRVVANDAQLGRVLGQYAVKSLAAKNVAVIDDRTAYGQGVAEEFA 188 Query: 189 KVAKANGIEVVSKDFTNDKATDFTAILTSIKSKKPDAVFLGGYAPQGGPIKRQMKQLGID 248 K KA G VV+ +TN+KATDF AILT+IK+KKPD +F GG GGP+ +QMKQLGI+ Sbjct: 189 KGVKAAGGTVVASQYTNNKATDFNAILTAIKAKKPDVIFFGGMDAVGGPMLQQMKQLGIN 248 Query: 249 VPLMGGDGICSPEMGRLGGDAIGE-SVYCTQGGTMLDKAKEG-KVFSDDYQKKYNRPAET 306 MGGDGIC+ + L G +GE +VYC + G + D K G F Y+K++ Sbjct: 249 AKFMGGDGICTGSLPGLAGAGLGENNVYCAEAGGVEDARKAGLDKFRAAYKKRFGIDVIY 308 Query: 307 YAVSFYDGMMLIAQAMKQANSVEPKAFGPALAKINYKGVAGQYDFDANHDLKQSPVTVYR 366 A YD + AM++A S E + P L KI+Y GV G FDA D+K +T+Y Sbjct: 309 TAAYAYDATYAVVDAMQKAKSWESAKYLPELTKISYPGVTGTIAFDAKGDIKDGTLTLYT 368 Query: 367 FKDGLPVPLS 376 ++ G L+ Sbjct: 369 YRGGKRTELA 378 >gi|152981352|ref|YP_001354956.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 376 Score = 321 bits (823), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 160/364 (43%), Positives = 239/364 (65%), Gaps = 7/364 (1%) Query: 10 IIAASLALIPAFAMAQETQVVKIGFSSPLTGPQASAGKDNQGGLMMAVERLNAQPITVGG 69 +IA++ L+ AQE Q VKIG ++PLTGPQA GKD+Q G +AV+ LN + I VGG Sbjct: 11 LIASASTLV----QAQEVQTVKIGLAAPLTGPQAFYGKDSQNGARLAVDELNEKKIVVGG 66 Query: 70 KKIKFEVLAEDDQADPKQGVAVAQKLADQGVKAIVGPYNSGVTIPASRVYNDAGI-VVAT 128 K+++FE+L+EDD ADPKQG AVAQ+ D V A++G NSG IPA+R+Y+ G+ ++ Sbjct: 67 KQLRFELLSEDDAADPKQGAAVAQRFCDLHVNAVIGHTNSGTAIPAARIYHQCGLPNLSP 126 Query: 129 VASNPKITQQGFATLFRVAASDSQLGGKMALYAAKELKLKRVAVIDDRTAYGQGLAEEFA 188 A++P++T+ + T FR+ A+DS L +A Y LKLK +AV+DDR+AYGQGLA+ F Sbjct: 127 SATSPELTKSAYNTTFRMLANDSTLAQALAAYTVNVLKLKTIAVVDDRSAYGQGLADAFR 186 Query: 189 KVAKANGIEVVSKDFTNDKATDFTAILTSIKSKKPDAVFLGGYAPQGGPIKRQMKQLGID 248 + ++VV++ +TNDKA DF+AILT+IK + PDAVF GG PQG + RQM+QLG+ Sbjct: 187 TALRNTPVQVVTQQYTNDKAVDFSAILTAIKGRNPDAVFFGGMDPQGSAMLRQMEQLGLT 246 Query: 249 V-PLMGGDGICSPEM-GRLGGDAIGESVYCTQGGTMLDKAKEGKVFSDDYQKKYNRPAET 306 +GGDGIC+ M R G I +++ C G LD+ + + Y +K+ + Sbjct: 247 RQKFIGGDGICTQGMEQRTEGMKIQDNLVCAHSGIALDRTTASRAWKKRYDEKFPGQFQM 306 Query: 307 YAVSFYDGMMLIAQAMKQANSVEPKAFGPALAKINYKGVAGQYDFDANHDLKQSPVTVYR 366 + YD ++ +A+AM+ ANSVEP+ + PA+ K+++ GV FDA ++K +++Y Sbjct: 307 HGPYSYDAVLAVAKAMQAANSVEPQKYLPAMGKVHFAGVMSNVQFDARGEIKNPTISIYT 366 Query: 367 FKDG 370 ++DG Sbjct: 367 YQDG 370 >gi|152981482|ref|YP_001352346.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 391 Score = 123 bits (308), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 116/376 (30%), Positives = 171/376 (45%), Gaps = 19/376 (5%) Query: 12 AASLALIPAFAMAQETQVVKIGFSSPLTGPQASAGKDNQGGLMMAVERLNAQPITVGGKK 71 A ++L+ A A++ VVKI F PLTG +S G + +AV NA P K Sbjct: 16 AVGMSLLSMTASAKD--VVKIAFVGPLTGGVSSIGLGGRNSADLAVRLRNADP----KAK 69 Query: 72 IKFEVLAEDDQADPKQGVAVAQKLA-DQGVKAIVGPYNSGVTIPASRVYNDAGI-VVATV 129 ++++ +DD+ P GV VA K+A D+ + A V + S V + VYN G+ V+ Sbjct: 70 YTYQLVTQDDECRPNVGVQVATKIAADKSIVAGVTHFCSAVAMGTVGVYNRFGLPVIVWG 129 Query: 130 ASNPKITQ-QGFATLFRVAAS---DSQLGGKMALYAAKELKLKRVAVIDDRTAYGQGLAE 185 A P+IT F + RV + S++ K + K+ A+I D T YG+G + Sbjct: 130 AVLPEITYGNDFKEVHRVNGTMINQSEVAAKFMISKG----YKKWAIIHDTTDYGKGHNK 185 Query: 186 EFAKVAKANGIEVVSKDFTNDKATDFTAILTSIKSKKPDAVFLGGYAPQGGPIKRQMKQL 245 F++ K NG V+S DFT LT I+ KPD V+ GG P G I+ QM++L Sbjct: 186 YFSEFVKKNGGTVLSTFGVTADQQDFTTELTKIRELKPDVVYFGGLTPLGVRIRTQMEKL 245 Query: 246 GIDVPLMGGDGICSPEMGRLGGDAIGESVYCTQGGTMLDKAKEGKVFSDDYQ-KKYNRPA 304 GI G GI S + G+ + E G +K G F+ YQ +KY+ P Sbjct: 246 GIKAQFEGTSGIKSDAYIQGVGEKVAEGSLSFIEGAPWEKIPGGLFFTAKYQLQKYSEPP 305 Query: 305 ETYAVSFYDGMMLIAQAMKQANSVEPKAFGPALAKINYKGVAGQYDFDANHDLKQSPVTV 364 E Y + LI A+++ K + + G+ FD + VT Sbjct: 306 EAYGPFAFAAANLIMDAVEKVGPDRKKVRDVLNQTKDVDTLIGKVTFDDHRQNIVPLVTK 365 Query: 365 YRFKDGLPVPL--SSY 378 Y +DG V SSY Sbjct: 366 YVVEDGKWVIWEDSSY 381 >gi|152981426|ref|YP_001352468.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 385 Score = 81.3 bits (199), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 107/379 (28%), Positives = 169/379 (44%), Gaps = 51/379 (13%) Query: 22 AMAQETQVVKIGFSSPLTGPQASAGKDNQGGLMMAVERLNAQPITVGGKKIKFEVLAEDD 81 A AQET +KIG + PLTGP A+AG G +A + +N Q V GKKI+ + ED+ Sbjct: 23 AYAQET--IKIGVTEPLTGPVAAAGTYVTNGARIAADYVN-QNGGVLGKKIQLVI--EDN 77 Query: 82 QADPKQGVAVAQKLA-DQGVKAIVGPYNSGVTI---PASRVYNDAGIVVATVASNPKITQ 137 +++P++ V +KL V ++G ++S T+ P Y +V A AS+ KIT Sbjct: 78 KSNPREAVNSVEKLILKDKVPVLMGAWSSTFTLAIMPKLIEYEVPLVVEA--ASSSKITT 135 Query: 138 QGFATLFR---VAASDSQLGGKMALYAAKELKLKRVAVIDDRTAYGQGLAEEFAKVAKAN 194 G +FR +A ++Q K+ +K V+++ +G G A EF K+ +A Sbjct: 136 AGNPWVFRTSPTSAMEAQAFSKVIDGYNPAIKKADFLVVNND--WGLGAAVEFKKMLEAK 193 Query: 195 GIEVVSKDFTNDKATDFTAILTSIKSKKPDAVFLGGYAPQGGPIKRQMKQLGIDVPLMGG 254 GI + + TD +A L ++K D VF + ++QL + + G Sbjct: 194 GIAIGRTETMTPDMTDLSAQLAALKGSGSDTVF----------VTSGIEQLTLAIRQAGE 243 Query: 255 DGICSPEMGRLGGDAIGESVYCTQG------GTML-------DKAKE---GKVFSDDYQK 298 + P+ G A E + T G +L ++AK K F D ++ Sbjct: 244 QRL--PQRIITTGGAFPEPLLKTPGPKGYVSQHLLFFAPWAPERAKHPAVAKAFMDGWKS 301 Query: 299 K-YNRPAETYAVSFYDGMMLIAQAMKQANSVEPKAFGPALAKINYKGVAGQYDFD----A 353 + + +D ++ IA+A+K A EP A AL K+ KG G F A Sbjct: 302 RGLELAGQVEGFRGFDAILTIAEAIKLAGKAEPAAIRDALWKVQVKGTNGDIAFSKVGVA 361 Query: 354 NHDLKQSPVTVY--RFKDG 370 + Q+ VY KDG Sbjct: 362 GKESGQANPNVYVVELKDG 380 >gi|152980080|ref|YP_001353239.1| ABC transporter leu/Ile/val-binding precursor signal peptide protein [Janthinobacterium sp. Marseille] Length = 410 Score = 66.2 bits (160), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 81/379 (21%), Positives = 156/379 (41%), Gaps = 28/379 (7%) Query: 1 MFKRVSGLNIIAASLALIPAFAMAQETQVVKIGFSSPLTGPQASAGKDNQGGLMMAVERL 60 MF R+ L I++A+ AL + + A+ V+I F PL+GP A G++ E Sbjct: 1 MFMRIPSL-ILSAAFALSASHSFAEN---VRIAFIDPLSGPFAPVGQNLLHSFQTIAELS 56 Query: 61 NAQPITVGGKKIKFEVLAEDDQADPKQGVAVAQKLADQGVKAIVGPYNSGVT---IPASR 117 N + GG E++ D++ P++ + + DQG + I SGV I A Sbjct: 57 NQK--QWGGSNT-VEIVGFDNKGSPQESLIQLKSAIDQGYRYITQGNGSGVALALIDAIN 113 Query: 118 VYNDAG-----IVVATVASNPKITQQGFATL-FRVAASDSQLGGKMALYAAKELKLKRVA 171 +N+ + + A +P +T + FR A+ + + AK+ +K++ Sbjct: 114 KHNERNPGKEVLFLNHSAGDPALTNSKCSFWHFRFDANSEMKMESLTTFMAKDPNIKKIY 173 Query: 172 VIDDRTAYGQGLAEEFAKVA--KANGIEVVSKDFTN-DKATDFTAILTSIKSKKPDAVFL 228 VI A GQ ++ K +++V D + DF+ + +K+ D + Sbjct: 174 VIGQNYALGQEISRSTRAYMGRKRPDVQIVGDDLHPIGQVKDFSPYVAKMKASGADTIIT 233 Query: 229 GGYAPQGGPIKRQMKQLGIDV---PLMGGDGICSPEMGRLGGDAIGESVYCTQGGTMLDK 285 + + + + + L MG G D + Y + ++ Sbjct: 234 ANWGADLALLVKAARDADLKANFYTLYAATTGVPTAMGAAGLDRVKYVAYWN----LNNE 289 Query: 286 AKEGKVFSDDYQKKYNRPAETYAVSFYDGMMLIAQAMKQANSVEPKAFGPALAKINYKGV 345 GK + ++KKYN + YA++ Y + ++ +A K+A S +P A+ + K + Sbjct: 290 TYAGKEIIEGFKKKYND--DYYAMASYTVLAMLGKAFKEAGSTDPLKVALAMEGMKVKSL 347 Query: 346 AGQYDFDANHDLKQSPVTV 364 G+ + + Q P+ + Sbjct: 348 NGEVEMRKSDHQAQQPLYI 366 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.133 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 908,442 Number of extensions: 39749 Number of successful extensions: 141 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 134 Number of HSP's successfully gapped: 7 Length of query: 378 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 293 Effective length of database: 906,776 Effective search space: 265685368 Effective search space used: 265685368 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)