BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0183.p
         (154 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980927|ref|YP_001351836.1| Lpr family transcriptional regu...   112   9e-27
gi|152981736|ref|YP_001352356.1| AsnC family transcriptional reg...    90   8e-20
gi|152981798|ref|YP_001355132.1| auxin efflux carrier [Janthinob...    80   5e-17

>gi|152980927|ref|YP_001351836.1| Lpr family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 155

 Score =  112 bits (280), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 90/153 (58%)

Query: 1   MAGLDKISKKILAELQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPE 60
           M   D+  + +L  LQ+ GR SNV+L+ RVNLSP  C  RV++L++ G I GY+AQ++  
Sbjct: 1   MEKFDRYDRILLETLQSKGRASNVELSERVNLSPPQCYRRVQRLEQEGVIRGYSAQVDAA 60

Query: 61  LLDVSLLVFIEVVLDRTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYR 120
            + + +  F+ + + R       E +K+++  PEI+EC+ ++G FDYL+K    D+ +  
Sbjct: 61  AIGLGVTAFVNLNIAREQFKQVRELEKAIRQFPEILECYTISGDFDYLLKVVAVDLKSLS 120

Query: 121 EFLGKSLLQLKGVRETHTYAVMEEVKNTIRLPI 153
            FL   L+Q+ GV    +   +EE+K    LP+
Sbjct: 121 SFLTDRLMQVPGVAGVRSMVCLEEIKPASPLPL 153


>gi|152981736|ref|YP_001352356.1| AsnC family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 169

 Score = 89.7 bits (221), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 81/148 (54%)

Query: 4   LDKISKKILAELQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPELLD 63
           LDK+ +K+L  LQ D +     LA +V++S   CL R+R +++AG I    A ++P  L 
Sbjct: 7   LDKVDRKLLNLLQKDNQTPTRTLADKVHISQPTCLRRIRDMRDAGIISADVAMIDPFALG 66

Query: 64  VSLLVFIEVVLDRTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYREFL 123
             +L F+EV L   + +   EF+  +    E+M+C+ V+G +DY +   V DM+AY +F+
Sbjct: 67  YGMLAFLEVSLGNQSDEHMQEFEVRMGKEAEVMQCYFVSGDYDYFLVVHVVDMDAYYQFV 126

Query: 124 GKSLLQLKGVRETHTYAVMEEVKNTIRL 151
            +++     VR   +   M+  K   R+
Sbjct: 127 RRAISGSGNVRHFQSRFPMKRAKFDTRI 154


>gi|152981798|ref|YP_001355132.1| auxin efflux carrier
           [Janthinobacterium sp. Marseille]
          Length = 157

 Score = 80.5 bits (197), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 78/150 (52%)

Query: 4   LDKISKKILAELQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPELLD 63
           LD++ ++IL  LQ D   +N DLAA V+ SP  CL RV++L +AG I    A + P+++ 
Sbjct: 8   LDELDRRILNALQMDASQTNNDLAAAVHASPPTCLRRVKRLIDAGVIERQVAIVAPQMVG 67

Query: 64  VSLLVFIEVVLDRTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYREFL 123
             L   +E+ LD+   +   EF+  V     +++C+ V+ G D+++  +V DM AY    
Sbjct: 68  AGLTSIVEITLDKQADEQQVEFEALVAQESAVLQCYRVSPGPDFVLVVQVADMPAYHVLA 127

Query: 124 GKSLLQLKGVRETHTYAVMEEVKNTIRLPI 153
            +       VR   ++  +   K   R+ +
Sbjct: 128 HRLFATHANVRNVRSFFSINRSKFETRIAV 157


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.137    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 326,595
Number of extensions: 11801
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 3
Length of query: 154
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 78
Effective length of database: 940,049
Effective search space: 73323822
Effective search space used: 73323822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)