BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0182.p (325 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152983221|ref|YP_001352664.1| AraC family transcriptional reg... 174 5e-45 gi|152982547|ref|YP_001353560.1| AraC family transcriptional reg... 114 6e-27 gi|152983214|ref|YP_001352649.1| transcriptional regulator [Jant... 78 8e-16 gi|152982298|ref|YP_001354777.1| AraC family transcriptional reg... 75 5e-15 gi|152983217|ref|YP_001352654.1| AraC family transcriptional reg... 71 7e-14 >gi|152983221|ref|YP_001352664.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 318 Score = 174 bits (442), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 118/324 (36%), Positives = 165/324 (50%), Gaps = 22/324 (6%) Query: 1 MDALSRLLSLHPVRAGLDIRCRFGQPWHLPHPALPEGVAPYHFILEGQAQLQLAQGEP-L 59 +D LSRLL + + L++ C +G PW + PYH +L G+A ++ + + Sbjct: 4 VDWLSRLLQMITITGKLEVHCTYGAPWRVAWSQSAAHEIPYHVVLNGRAIIEDPETKTNR 63 Query: 60 ALQAGDLVVLTRGAAHGIFTAPAAQ--AIAPRQGVTAAPVQLHVNDDQGGGAQPLSDFLC 117 L AGD+V+L G+AH + RQG +A L N+ G D LC Sbjct: 64 ELLAGDIVLLPHGSAHVLHDGSGHPPGTTHNRQG--SAGWTLSENESPGEHL----DMLC 117 Query: 118 GQFHFDAPHSNALVQALPEVLLVR-------GAELPDGDGLRTLAALLRNECGGADGRGE 170 G+F + PH + LP L+VR G+ + L +L L+R E G Sbjct: 118 GRFFIEPPHDRMIHDYLPATLIVRAIDGHSEGSIKSASNHLVSLVELMRVESAGD----- 172 Query: 171 LRAGAQAVVAALAAALFGLAIRAWLAQGGPQPGLLALLAHPVLQEALQAMLEAPHEDWSL 230 + G A++ +L +ALF LA+RA PGLLAL H L A+ AM P W+L Sbjct: 173 -KPGGCAILNSLTSALFTLALRAASESEQAPPGLLALAGHSRLTPAISAMFTNPARPWNL 231 Query: 231 PRLAALCHMSRATFVRRFQEVGGATPGEVVQQLRMSQAARFLSYSKMSTAQIGEAVGYQS 290 P LA LC+MSRATFVR FQ+ G + E++ +RMS AA L M+T + +AVGY+S Sbjct: 232 PDLADLCNMSRATFVRHFQDKLGRSAIELLTDIRMSMAANELKKPGMTTEAVADAVGYRS 291 Query: 291 EAAFNRVFKKFSGMGPGAYRRKMR 314 AAF R+F + GM PG RR R Sbjct: 292 VAAFRRIFTEKMGMTPGQCRRLSR 315 >gi|152982547|ref|YP_001353560.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 326 Score = 114 bits (286), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 85/303 (28%), Positives = 139/303 (45%), Gaps = 24/303 (7%) Query: 20 RCRFGQPWHLPHPALPEGVAPYHFILEGQAQLQLAQGEPLALQAGDLVVLTRGAAHGIFT 79 RC +PW + P P+ A +HFI +G ++ + + L GD ++L R H + + Sbjct: 34 RCVMHEPWAIAFP--PKREASFHFIAQGHCWIRTQTTDWMRLNPGDALLLPRSTFHVLAS 91 Query: 80 APAAQAI-APRQGVTAAPVQLHVNDDQGGGAQPLSD-------FLCGQFHFDAPHSNALV 131 +P I T L + +D+ + ++D CG F+ + L+ Sbjct: 92 SPEVPTIDVDALARTVVSENLFLVNDEKSSHKVVADDETAAHILFCGMMRFNLDPLHPLL 151 Query: 132 QALPEVLLVRGAELPDGD--GLRTLAALLRNECGGADGRGELRAGAQAVVAALAAALFGL 189 +P+V+ R +L D L L A+ R R GA ++A LA L Sbjct: 152 AMMPDVM--RACDLAQRDPAVLVMLEAMEREIALD-------RIGACGILARLADVLAAS 202 Query: 190 AIRAWL--AQGGPQPGLLALLAHPVLQEALQAMLEAPHEDWSLPRLAALCHMSRATFVRR 247 IRAW+ A G G +A + P + L A+ P +WS+ LA + SR++FV + Sbjct: 203 IIRAWVECASSGAT-GWIAAVRCPQIGRVLAAIHNQPEREWSVAELATVMGASRSSFVEK 261 Query: 248 FQEVGGATPGEVVQQLRMSQAARFLSYSKMSTAQIGEAVGYQSEAAFNRVFKKFSGMGPG 307 F G TP + V +++M QA ++++ M A + +GY SEA+F+R FK+ G P Sbjct: 262 FSNAVGETPAKYVARVKMFQARHWIAHEGMRMATVASRLGYDSEASFSRAFKRIIGHPPS 321 Query: 308 AYR 310 R Sbjct: 322 EAR 324 >gi|152983214|ref|YP_001352649.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 308 Score = 77.8 bits (190), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 76/278 (27%), Positives = 116/278 (41%), Gaps = 12/278 (4%) Query: 38 VAPYHFILEGQAQLQLAQGEPLALQAGDLVVLTRGAAHGIFTAPAAQAIAPRQGVTAAPV 97 A H+ LEG L + P+ L + V+L G A+ I + + I P+ Sbjct: 35 TASLHYCLEGIGTLVVHGTAPIHLTSHTFVLLPPGIAYRI-ESTSENPIRLEYHALLRPL 93 Query: 98 QLH--VNDDQGGGAQPLSDFLCGQFHFDAPHSNALVQALPEVLLVRGAELPDGDGLRTLA 155 H V GG Q +CG+ P L L E L+ R D +GLR Sbjct: 94 SSHQSVTTLVVGGKQQGIVTVCGEIRVKLPGGADLFTLLNEPLIAR---FSDANGLRDQF 150 Query: 156 ALLRNECGGADGRGELRAGAQAVVAALAAALFGLAIRAWLAQGGPQPGLLALLAHPVLQE 215 A+L E G G L + AL LA+R W+ LA + L Sbjct: 151 AMLLAE-SARPGIGSL-----VLTEALLKQCLVLALRRWVESDSSPLPWLAAVGDTRLSR 204 Query: 216 ALQAMLEAPHEDWSLPRLAALCHMSRATFVRRFQEVGGATPGEVVQQLRMSQAARFLSYS 275 AL A+ E P +++ LA + MSR+ F FQ G +P +V+ +R+ +A L + Sbjct: 205 ALHAIFEQPAIAYTVDSLAMIAGMSRSAFAAAFQRAFGQSPMSLVRLVRLRRAGELLITT 264 Query: 276 KMSTAQIGEAVGYQSEAAFNRVFKKFSGMGPGAYRRKM 313 + A++ VG+ S + F+ F + G+ P +RR Sbjct: 265 ALPVAEVANRVGFSSRSNFSLAFSQLYGLDPSRFRRTF 302 >gi|152982298|ref|YP_001354777.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 310 Score = 75.1 bits (183), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 197 QGGPQPGLLALLAHPVLQEALQAMLEAPHEDWSLPRLAALCHMSRATFVRRFQEVGGATP 256 G PGLL LA L A++ + E+P + W++ LA +SR+TF RF G TP Sbjct: 182 NAGTSPGLLRGLADIRLANAIRCIHESPEQPWTVALLAKASALSRSTFFERFSAALGVTP 241 Query: 257 GEVVQQLRMSQAARFLSYSKMSTAQIGEAVGYQSEAAFNRVFKKFSGMGPGAYRRK 312 + + RM+ A FL K + A++ VGY S + F F + +GM PG Y + Sbjct: 242 MDYLLSWRMALARNFLERKK-TIAEVAALVGYSSSSTFTVAFTRHTGMPPGQYSKS 296 >gi|152983217|ref|YP_001352654.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 323 Score = 71.2 bits (173), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 73/279 (26%), Positives = 125/279 (44%), Gaps = 16/279 (5%) Query: 39 APYHFILEGQAQLQLAQGEPLALQAGDLVVLTRGAAHGIFTAPAAQAIAPRQGVTAAPVQ 98 A H+ LEG+ L + P+ L+ V+L G A+ I +A + ++I ++ Sbjct: 45 ASLHYCLEGRGTLTVHGSPPIQLEPHTFVLLPSGIAYRIESA-SHESIQLEHRISLCGSF 103 Query: 99 LHVNDDQ---GGGAQPLSDFLCGQFHFDAPHSNALVQALPEVLLVRGAELPDGDGLRTLA 155 H + G G Q + +CG+ + + L +L +V LV A +GLR Sbjct: 104 SHESVPTLVVGNGLQGIVT-VCGEIRVELASGSDLFTSL-DVPLV--ARFNGANGLRDQF 159 Query: 156 ALLRNECGGADGRGELRAGAQAVVAALAAALFGLAIRAWLAQGGPQP-GLLALLAHPVLQ 214 +L E G+ + AL LA+R W + P P LA + L Sbjct: 160 VMLLAESTQPG------IGSSVLTEALLKQCLVLALRQW-GENDPSPLPWLAAVGDKRLS 212 Query: 215 EALQAMLEAPHEDWSLPRLAALCHMSRATFVRRFQEVGGATPGEVVQQLRMSQAARFLSY 274 AL A+ E P +++ LA + MSR+ F FQ G +P +V+ +R+ +A+ L Sbjct: 213 RALHAIFEHPAIAYTVDSLAMIAGMSRSAFAAAFQRAFGQSPMSLVRLVRLRRASELLIT 272 Query: 275 SKMSTAQIGEAVGYQSEAAFNRVFKKFSGMGPGAYRRKM 313 + + A++ + VG+ S + F+ F + G+ P +RR Sbjct: 273 TAIPVAEVAKRVGFSSRSNFSLAFSQLYGLDPSRFRRTF 311 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 653,611 Number of extensions: 23396 Number of successful extensions: 109 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 105 Number of HSP's successfully gapped: 13 Length of query: 325 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 242 Effective length of database: 914,170 Effective search space: 221229140 Effective search space used: 221229140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)