BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0181.p
         (177 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982905|ref|YP_001352612.1| hypothetical protein mma_0922 [...    97   5e-22
gi|152983060|ref|YP_001352661.1| macrophage infectivity potentia...    92   2e-20
gi|152982018|ref|YP_001352663.1| hypothetical protein mma_0973 [...    79   2e-16

>gi|152982905|ref|YP_001352612.1| hypothetical protein mma_0922
           [Janthinobacterium sp. Marseille]
          Length = 199

 Score = 97.1 bits (240), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/177 (36%), Positives = 93/177 (52%), Gaps = 5/177 (2%)

Query: 1   MSRLNT-TPVSQASGQAAQLFAAIKSAIGMVPNAYAGIGSLSPVALESALQLDGALRKSS 59
           MSRL T   V  +  ++  L  A+   +G+VPN +  +GS +P ALE  L L GAL K +
Sbjct: 17  MSRLFTPATVIDSPAKSQPLLEAVNKQLGVVPNLFRLVGS-NPAALEGYLNLSGALNKGA 75

Query: 60  LSAKEIEAIKLAVSQRAGCDYCLAAHALMGKKVG-LSAQAIDGVRHGQASGDDKLDVLAD 118
           L A   E I LA+++   CDYCL+AH  + K +  LS   I   R G +S D K +    
Sbjct: 76  LPAPTRERIALAIAEFNACDYCLSAHTYLAKNLAKLSDAEITANRSG-SSSDPKAEAAVA 134

Query: 119 FVRQLVGTSGTVEASVVERVRAV-YSDAQIVDTLLAVTAITFTNLFNRVNDTVLDFP 174
           F  ++    G V  S ++ V+A  Y DAQ+++ +  V     TN  N V  T +DFP
Sbjct: 135 FALKVATDRGHVNDSDIQTVKAAGYDDAQVIEIIAHVALNVLTNYINSVAHTEIDFP 191


>gi|152983060|ref|YP_001352661.1| macrophage infectivity
           potentiator-related protein [Janthinobacterium sp.
           Marseille]
          Length = 180

 Score = 92.0 bits (227), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 81/178 (45%), Gaps = 4/178 (2%)

Query: 1   MSRLNTTPVSQASGQAAQLFAAIKSAIGMVPNAYAGIGSLSPVALESALQLDGALRKSSL 60
           M R       Q    +     A   ++G  PN  A     SP+A  +     G+L K+ L
Sbjct: 1   MPRATALKPEQVPADSKPTLDAFSKSLGFTPNMLATFAQ-SPIAFNAWATFRGSLNKA-L 58

Query: 61  SAKEIEAIKLAVSQRAGCDYCLAAHALMGKKVGLSAQAIDGVRHGQASGDDKLDVLADFV 120
             K  EAI L VS+  GC+YCLA H        L A  I   R G +S D K D    F 
Sbjct: 59  DMKTREAISLVVSEVNGCNYCLAVHTYAANMAKLPADEIILARKGHSS-DPKRDAAVQFA 117

Query: 121 RQLVGTSGTVEASVVERVRAV-YSDAQIVDTLLAVTAITFTNLFNRVNDTVLDFPPAP 177
           R+++   G V  + V+ VR V Y+DA I++ +  V   + TN FN V D   D+P  P
Sbjct: 118 RKVIENRGQVNDTDVQAVRDVGYTDANIMEIVSMVAMFSLTNFFNNVFDPEKDYPAVP 175


>gi|152982018|ref|YP_001352663.1| hypothetical protein mma_0973
           [Janthinobacterium sp. Marseille]
          Length = 181

 Score = 78.6 bits (192), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 77/150 (51%), Gaps = 5/150 (3%)

Query: 27  IGMVPNAYAGIGSLSPVALESALQLDGALRKSSLSAKEIEAIKLAVSQRAGCDYCLAAHA 86
           IG  PN  A     SP+A  +   L G+L K+ L  K  ++I LAVS+  GC+YCL  H+
Sbjct: 27  IGFTPNMMATFAQ-SPIAFNAWATLLGSLSKA-LDVKTRDSIGLAVSEVNGCNYCLTVHS 84

Query: 87  LMGKKVG-LSAQAIDGVRHGQASGDDKLDVLADFVRQLVGTSGTVEASVVERVR-AVYSD 144
              + +  L A  I   R G+A+ D K D    F R++    G V  + ++ VR A Y+D
Sbjct: 85  FTAQHMAKLPADEIILARKGRAN-DPKRDAAVQFARKVTENRGQVNDADLKIVRDAGYTD 143

Query: 145 AQIVDTLLAVTAITFTNLFNRVNDTVLDFP 174
           A I++ +  V   + TN  N V D   DFP
Sbjct: 144 ANIMEIVALVAMYSLTNFINNVFDPEKDFP 173


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.130    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 348,807
Number of extensions: 11544
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 3
Length of query: 177
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 100
Effective length of database: 936,352
Effective search space: 93635200
Effective search space used: 93635200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)