BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0180.p (684 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982776|ref|YP_001354901.1| outer membrane hemin receptor [... 882 0.0 gi|152980421|ref|YP_001355108.1| TonB-dependent haemoglobin/tran... 63 5e-11 >gi|152982776|ref|YP_001354901.1| outer membrane hemin receptor [Janthinobacterium sp. Marseille] Length = 673 Score = 882 bits (2278), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/688 (64%), Positives = 519/688 (75%), Gaps = 19/688 (2%) Query: 1 MALQRQLIASAVLTALAAWSVSAAAQVADTAAAASAVPTTPATQPALQPIVVTATPFASQ 60 M QR L+ASAVL+ALA+ S SA AQ + T PA +VVTA+PF++ Sbjct: 1 MIAQRTLLASAVLSALASLSNSALAQEQEK--------TLPA-------VVVTASPFSND 45 Query: 61 EDVQVLTPAKVIAGDELRNKLGNSLGETLNGELGVSASAFGAGASRPIIRGMEGPRVMIL 120 E Q++ PAKV+ GDELR KLGNSLG+TL+ ELGVSASAFGAGASRPIIRGMEGPRV IL Sbjct: 46 ESAQIMAPAKVLYGDELREKLGNSLGDTLSQELGVSASAFGAGASRPIIRGMEGPRVKIL 105 Query: 121 QNGMGVADVSTVSNDHAVATEAATARQVEILRGPATLLYGSGAIGGLVNVVNDRIPTELV 180 QNGM V D S++SNDHAV E+ATARQ+EILRGP+ LLYGSGAIGG+VN+VNDRIPT L Sbjct: 106 QNGMSVMDASSLSNDHAVVGESATARQIEILRGPSALLYGSGAIGGVVNIVNDRIPTILN 165 Query: 181 GKPTGTVEGRYGTVDGEKNGSFSLDTSAGQIGLHLDGNYRDTDNYKIPGNARQADSSSAS 240 KPTG E R+G+ D KN SFS+D +AG IGLH+DGN RD D+YKIPG A D S S Sbjct: 166 SKPTGEAETRFGSADKMKNASFSVDGAAGAIGLHVDGNVRDADDYKIPGYANPNDPSQGS 225 Query: 241 GRLPNSFTHETSLGAGISYVSNWGYIGLSAATLDDHYGIPTDEMSFIDLHQSRYDFDTVV 300 GRLPNS+ S+G G SY+ +WGYIG S D+ YGIPT E SFI L Q+RYD ++ Sbjct: 226 GRLPNSYARANSVGFGASYIQSWGYIGASVGVDDNRYGIPTAEKSFITLDQTRYDIGGLI 285 Query: 301 NRPFAGIEKLRVRMGYTDYTHIEKQQNGTPNTVFSNRALQTRWELTHALLAGWHGTFGVQ 360 PF E R ++G+TDY H E ++GTP T F N+A +TRWELTH LAGW GTFG+Q Sbjct: 286 KNPFENFESFRFKIGHTDYKHTENLEDGTPATEFKNKASETRWELTHKPLAGWRGTFGLQ 345 Query: 361 TEQSNYSALA--PDTGAAELT-PPTRSNSLAGFLVEERQFGQVLASAGLRAESVSRRPDS 417 TE S +SAL D G + T P T+S S+AGFLVEER FG ASAG R ESV RRPD+ Sbjct: 346 TENSEFSALPVDDDHGHSHATVPVTKSQSVAGFLVEERDFGPFRASAGARIESVKRRPDT 405 Query: 418 GSGLPGRDFSLLSWSTGGLWAFQPGYGLGLTYSFAQRAPTVEELYSNGPHESTSTFDIGD 477 SGL RDF+L S+S GGLW F GYGLGLT S AQRAP +EELYSNGPHEST+T+DIGD Sbjct: 406 ASGLVQRDFNLGSYSLGGLWTFTQGYGLGLTASVAQRAPAIEELYSNGPHESTATYDIGD 465 Query: 478 QQLKKETSHNVELSLQKTEGLVRWKGNVFRNKVNNFIYGRTNG-QVDSSGAADPNGEFTQ 536 L+KETS N+ELSLQKTEGL+RWK NV++N+V N++YGRT+G VD G ADP+GEF Q Sbjct: 466 ANLRKETSRNIELSLQKTEGLMRWKANVYQNRVKNYVYGRTDGTMVDDHGDADPSGEFLQ 525 Query: 537 RFWSQGDATIRGVEAEVTYNWNGEGLSGRVFADTSRGTLENLGNLPLQPATRYGIELGYK 596 RFWSQ DATIRG+EAE++YN G G S R FADTSRGTL GNLPLQP TR G E+GY+ Sbjct: 526 RFWSQNDATIRGIEAELSYNLRGNGFSWRGFADTSRGTLSGAGNLPLQPTTRVGAEIGYR 585 Query: 597 TGPWASGVKLLRAQKQDRLASFETYETPSYTQLDANLSYTQRINGAKLTWFALARNLLNQ 656 G W SG+K+L A+KQDRLASFETY PSYTQ+DANLSYTQ N +TWFA+A+NLLN+ Sbjct: 586 EGNWRSGLKVLHAEKQDRLASFETYAAPSYTQVDANLSYTQNYNSTPVTWFAIAKNLLNE 645 Query: 657 DIRLSTSVLRESVPLGGRNFIVGVRTSF 684 DIRLSTSVLRE PL GRN I+GVRTSF Sbjct: 646 DIRLSTSVLREVAPLSGRNLIIGVRTSF 673 >gi|152980421|ref|YP_001355108.1| TonB-dependent haemoglobin/transferrin/lactoferrin receptor [Janthinobacterium sp. Marseille] Length = 754 Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 150/651 (23%), Positives = 254/651 (39%), Gaps = 134/651 (20%) Query: 1 MALQRQLIASAVLTALAAWSV--SAAAQVADTAAAASAVPTTPATQPALQPIVVTATPFA 58 M L ++ +A A + L W V + A Q+A L I VT+T Sbjct: 1 MKLCKKKLALATVLVLQQWPVHQAGAQQIA-----------------KLDEITVTSTRGL 43 Query: 59 SQEDVQVLTPAKVIAGDELRNKLGNSLGETLNGELGVS---ASAFGAGASRP-------- 107 + + V+ +E+ + + + L E GV + A +G S Sbjct: 44 GGDINRAAATVSVVTAEEIEQQNAKDIKDALRYEPGVEVRRSVARTSGISGAGATAGRGG 103 Query: 108 ----IIRGMEGPRVMILQNGMGVA---DVSTVSNDHAVATEAATARQVEILRGPATLLYG 160 IRG++G RV++L++G+ V V T+S +++E+LRGPA+ +YG Sbjct: 104 NEGITIRGLDGNRVLLLEDGVPVPRAFSVGTLSAGRGSYLNTDLYQRIEVLRGPASSMYG 163 Query: 161 SGAIGGLVNVVNDRIPTE---LVGKPT-GTVEGRYGTVDGE--KNGSFSLDTSAGQIGLH 214 S + G VN V + P + + K T +V Y +VD +G+F++ Q + Sbjct: 164 SDGLTGAVNFVM-KDPQDYLNIFNKSTYFSVRPSYDSVDNSFGTSGTFAVGGERWQGMVL 222 Query: 215 LDGNY-RDTDNY---KIPGNARQA------DSSSASGRLPNSFTHETSLGAGISYVSNW- 263 L+ + ++TDN I G R A D+ SA GR+ T ++ N Sbjct: 223 LNARHGKETDNKGDRDITGTNRTAPDPLTYDTQSALGRVVFRATANDVFKWTLATTENKT 282 Query: 264 -----GYIGLSA-ATLDDHY----GIPTDEMSFIDLHQSRYDFDTVVNRPFAGIEKLRVR 313 IG +A T Y + +D +F R D D V ++K+R Sbjct: 283 AGSSPSAIGPAAGGTFVTGYQTTSKVQSDRFTF---AYERDDADNPV------VQKIRAN 333 Query: 314 MGYTDY-THIEKQQNGTPNTVFSNRALQTRWE----------------LTHALLAGWHGT 356 + Y D T+ ++GT T R + + + + + L+ G+ + Sbjct: 334 VFYRDANTNQYTFESGTGPTRPRFRDVTYKDQAVGGGVMAESSFNVGGIKNQLVYGFDVS 393 Query: 357 FGVQTEQSNYSALAPDTGA--AELTPPTRSNSLAGFLVEERQFGQVLASAGLRAESVSRR 414 ++Q+ + + TG EL P T + ++ ++ + G++ GLR +S Sbjct: 394 KSQLSQQATGTGWSSCTGTQYCELFPKTNYSIFGAYVQDDIRIGKLSVIPGLRYDSYELD 453 Query: 415 PDS---------GSGLPG---RDFSLLSWSTGGLWAFQPGYGLGLTYSFAQRAPTVEELY 462 P + +G P +D + +S L+ P + Y+ RAP+ Sbjct: 454 PKASARYDAQANANGQPAARSKD-NAISPRLAFLYEVTPAFVPYAQYARGFRAPS----- 507 Query: 463 SNGPHESTSTFD-----------IGDQQLKKETSHNVELSLQKTEGL----VRWKGNVFR 507 PHE S F+ I + LK ETS++ E+ L+ L VR+ F Sbjct: 508 ---PHEVNSYFNNVGVPGGSYMQIANPDLKAETSNSYEIGLRGKVDLADSRVRYSAAAFA 564 Query: 508 NKVNNFIYGRTNGQVDSSGAADPNGEFTQRFWSQGDATIRGVEAEVTYNWN 558 + NFI V G ++ + A I GVEA V + WN Sbjct: 565 GRYKNFI-----ELVQIGGNFQVATPAINQYINSSRANIHGVEARVDWRWN 610 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.314 0.131 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,596,652 Number of extensions: 72269 Number of successful extensions: 209 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 212 Number of HSP's successfully gapped: 5 Length of query: 684 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 594 Effective length of database: 888,291 Effective search space: 527644854 Effective search space used: 527644854 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)