BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0179.p
         (146 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982858|ref|YP_001354900.1| hypothetical protein mma_3210 [...    64   5e-12

>gi|152982858|ref|YP_001354900.1| hypothetical protein mma_3210
           [Janthinobacterium sp. Marseille]
          Length = 123

 Score = 63.5 bits (153), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 62/144 (43%), Gaps = 37/144 (25%)

Query: 6   SLRRPAVIVFLAMTLLFAQMLGFVHGIAHAGWVPGTVHSLISEALFDETEDDHAAASVAT 65
           + RR      L   +LFAQ +G  H I H  W     H +          ++H  A VA 
Sbjct: 11  TTRRLCFAALLVALVLFAQWMGLRHRIEHVDWGSVQHHQM----------EEHGTA-VAE 59

Query: 66  SAALGSDSGRDADAHDLHDVHAHHPHHSCLDYDAAALSVGVHFDFPPLPLLP----PVRL 121
               G  S                  HSC+ +D  AL+ G     P LP  P     VR+
Sbjct: 60  LEYAGDKS------------------HSCILFDGMALADGA----PLLPFSPVLQTSVRV 97

Query: 122 LALWQAFASWDAPLNCHFFSRAPP 145
           LALW A+ SWDAPL CHF SRAPP
Sbjct: 98  LALWAAYISWDAPLLCHFSSRAPP 121


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.326    0.137    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 242,757
Number of extensions: 6409
Number of successful extensions: 27
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 1,221,021
Length adjustment: 75
Effective length of query: 71
Effective length of database: 943,746
Effective search space: 67005966
Effective search space used: 67005966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 125 (52.8 bits)