BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0176.p
         (251 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980739|ref|YP_001354915.1| thiamine biosynthesis protein T...   380   e-107

>gi|152980739|ref|YP_001354915.1| thiamine biosynthesis protein ThiF
           [Janthinobacterium sp. Marseille]
          Length = 250

 Score =  380 bits (977), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 180/250 (72%), Positives = 209/250 (83%)

Query: 1   MDDQQLLRYSRHILLDDIDIAGQTRLLQSHALIIGAGGLGSPAAMYLASAGVGHITLVDH 60
           M+DQQLLRYSRHILLD+IDI GQ +LL +H LIIGAGGLGSPAA YLASAGVG ITLVD 
Sbjct: 1   MNDQQLLRYSRHILLDEIDIEGQEKLLAAHVLIIGAGGLGSPAAFYLASAGVGTITLVDD 60

Query: 61  DTVDLTNLQRQIMHTTARVGEPKVESGRQALQEINPGVQVTTVAERVEGARLQALVTQAD 120
           DTVDLTNLQRQI+HTT RVG+ K  SG+Q L+EINP ++V  + ERV GARL  LV  A 
Sbjct: 61  DTVDLTNLQRQILHTTQRVGQAKAASGKQTLEEINPTIKVVALQERVSGARLDELVRNAT 120

Query: 121 VVLDCSDNFATRHAVNRACVAAGVPLVSGAAIRFDGQVSVFDTRQQSAPCYACLFPPERE 180
           VVLDC DNFATRHAVNRACVA  VPLVSGAAI+FDGQ+SVFD R + APCY+CLFP ++E
Sbjct: 121 VVLDCCDNFATRHAVNRACVANRVPLVSGAAIKFDGQISVFDRRDEQAPCYSCLFPEDQE 180

Query: 181 FEEVQCSTMGVFSPLVGIIGTMQAAEAIKLLAGIGRSLAGRLLILDAREMEWTAIAIGRD 240
           FE+V C TMGVF+PLVGI+G+ QAAEA+KL+ GIG SLAGRLL+LDAR MEW++I + R+
Sbjct: 181 FEDVNCGTMGVFAPLVGIVGSTQAAEALKLIVGIGESLAGRLLMLDARTMEWSSIKVKRN 240

Query: 241 RQCPVCAQRH 250
            +C VC Q H
Sbjct: 241 AKCVVCGQAH 250


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 576,654
Number of extensions: 23476
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 2
Length of query: 251
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 170
Effective length of database: 921,564
Effective search space: 156665880
Effective search space used: 156665880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)