BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0175.p
         (498 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981142|ref|YP_001354914.1| carboxyl-terminal processing pr...   787   0.0  

>gi|152981142|ref|YP_001354914.1| carboxyl-terminal processing
           protease [Janthinobacterium sp. Marseille]
          Length = 499

 Score =  787 bits (2033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/491 (78%), Positives = 440/491 (89%), Gaps = 4/491 (0%)

Query: 1   MGSKLKNIGLIGLGMVAGATAM-IQFDAIAQKNATAS-LPLEELRQMADVFGLIKSDYVE 58
           MG+KLKNIGL+GLGMVAG  AM  Q DA+AQKNA  + LPLEELRQ+++VFGLIKSDYVE
Sbjct: 3   MGTKLKNIGLVGLGMVAGVIAMGTQLDAMAQKNAAGTPLPLEELRQLSEVFGLIKSDYVE 62

Query: 59  PVDDRKLLTEAISGMVASLDPHSAYLDKKAYKELREGTMGKFVGLGIEVGMEDGYVKVIS 118
           PVDD+KLLTEAISGMV+SLDPHSAYLDKKA+KELREGT GKFVGLGIEVGMEDGYVKVIS
Sbjct: 63  PVDDKKLLTEAISGMVSSLDPHSAYLDKKAFKELREGTQGKFVGLGIEVGMEDGYVKVIS 122

Query: 119 PIEDSPAFRAGIKAGDLITRLDSTPVKGLTLDEAVKKMRGEPNTKITLTIARKDEDKPIV 178
           PIEDSPA+RAGIKAGDLITRLDSTPVKG+TLDEAVK+MRGEPNTKITLTIARKDEDKP++
Sbjct: 123 PIEDSPAYRAGIKAGDLITRLDSTPVKGMTLDEAVKRMRGEPNTKITLTIARKDEDKPVI 182

Query: 179 LTITRQEIRVQSVKSKVVEPGYAWLRVTQFQEPTVDDMSKKLAAIYAQEPNLKGIVLDLR 238
           + ITRQEIRVQSVK+KVVEPGYAWLRV+QFQEPT+DDM KK+AA+YAQ+PNLKG+VLDLR
Sbjct: 183 VAITRQEIRVQSVKAKVVEPGYAWLRVSQFQEPTIDDMVKKIAALYAQDPNLKGLVLDLR 242

Query: 239 NDPGGVLPGAIGVAAAFLPKDSVVVSTNGQLPSSKQTFYAKREYYASNPLSDPLSRLPDA 298
           NDPGGVLPGAIGV+AAFLPKD VV STNGQLPSSK+T+YA+RE+YAS  + DPL++LP+A
Sbjct: 243 NDPGGVLPGAIGVSAAFLPKDVVVTSTNGQLPSSKETYYARREFYASRSVGDPLAKLPEA 302

Query: 299 IKKVPMVVLINSGSASASEIVAGALQDYKRATIMGTQSFGKGSVQSVIALPPEKNTAVKL 358
           +KK+PMVVL+NSGSASASEIVAGALQD+KRATIMGTQ+FGKGSVQ++  L    +TAVKL
Sbjct: 303 LKKIPMVVLVNSGSASASEIVAGALQDHKRATIMGTQTFGKGSVQTIRQL--SADTAVKL 360

Query: 359 TTARYYTPKGRSIQARGIVPDIMVDEYPDGDGLNGLRLREADLSKHLTNDTDKSAEVKAQ 418
           TTARYYTP GRSIQA+GIVPD+MVDE  DGDGLNGLRLREADL KHLTND DK  EV A 
Sbjct: 361 TTARYYTPSGRSIQAKGIVPDLMVDETADGDGLNGLRLREADLQKHLTNDKDKGPEVHAA 420

Query: 419 SMDEQSEERLIAAEKKRKPMDFGSKDDFQLIQALNHLKGLPVKVSNAKPEVRNEEGKNSA 478
             + + E+RL A EKKRKP++FGSKDDFQL QALNHLKGLPV +S AKPE + EE   + 
Sbjct: 421 VDELEEEQRLAALEKKRKPLEFGSKDDFQLTQALNHLKGLPVVLSKAKPEPKKEEPGINK 480

Query: 479 PVKDERKDNKA 489
           P  + + + KA
Sbjct: 481 PKTEPKPEPKA 491


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.312    0.131    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,161,251
Number of extensions: 50282
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 411
Effective length of database: 899,382
Effective search space: 369646002
Effective search space used: 369646002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 131 (55.1 bits)