BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0173.p
         (248 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981106|ref|YP_001354912.1| phosphoglycerate mutase [Janthi...   374   e-105
gi|152981005|ref|YP_001355166.1| phosphoglycerate mutase [Janthi...   253   9e-69

>gi|152981106|ref|YP_001354912.1| phosphoglycerate mutase
           [Janthinobacterium sp. Marseille]
          Length = 248

 Score =  374 bits (961), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 176/248 (70%), Positives = 204/248 (82%)

Query: 1   MYKIVFMRHGESTWNLANRFTGWVDVDLTEKGVAEARQAGKLLKEAGFSFDLAYTSVLKR 60
           MYKIV MRHGESTWNL NRFTGW DVDLTEKG  EA+ AG+LL+EAGF+FDLAY+SVLKR
Sbjct: 1   MYKIVLMRHGESTWNLDNRFTGWADVDLTEKGRNEAKHAGELLREAGFTFDLAYSSVLKR 60

Query: 61  AIRTLWTTLDEMDQMYIPIKNDWRLNERHYGALQGLNKAETAAQYGDEQVLVWRRSYDTP 120
           AIRTLW  LDEMD M+IP+  DW LNERHYGALQG+NKAETA +YG +QVL WRRSYD P
Sbjct: 61  AIRTLWIALDEMDLMWIPVVCDWHLNERHYGALQGMNKAETAEKYGADQVLQWRRSYDIP 120

Query: 121 PNPLTPGEERDSFGDARYAGLSREQVPLTECLKDTVARVLPAWNDAIAPAIRAGKQIIVS 180
           P  L   + R  F D RYA L R ++PL ECLKDT+ RV P WND I P+IRAGKQII+S
Sbjct: 121 PKHLAEDDPRTMFDDPRYAHLQRAEIPLGECLKDTLLRVEPYWNDTIVPSIRAGKQIIIS 180

Query: 181 AHGNSLRALIKYLDGISDNDIVGLNIPNGQPLVYELDADLKPIKSYYLGDQSAIEAALKA 240
           AHGNSLRALIK LD ISD DIV L+IPNG+P+VYELD +LKPI+ YYLGDQ +++AA++A
Sbjct: 181 AHGNSLRALIKILDDISDQDIVSLSIPNGRPIVYELDENLKPIRHYYLGDQESLQAAVQA 240

Query: 241 VANQGKSK 248
            A+ G+SK
Sbjct: 241 AASHGQSK 248


>gi|152981005|ref|YP_001355166.1| phosphoglycerate mutase
           [Janthinobacterium sp. Marseille]
          Length = 240

 Score =  253 bits (646), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 116/230 (50%), Positives = 158/230 (68%)

Query: 1   MYKIVFMRHGESTWNLANRFTGWVDVDLTEKGVAEARQAGKLLKEAGFSFDLAYTSVLKR 60
           M  +V +RHGES WN  NRFTGW D+DLT  G+ +AR AG+ L +AGF FDLA TS+LKR
Sbjct: 1   MGNLVIVRHGESQWNRENRFTGWADIDLTANGIEQARCAGRALAKAGFRFDLAITSMLKR 60

Query: 61  AIRTLWTTLDEMDQMYIPIKNDWRLNERHYGALQGLNKAETAAQYGDEQVLVWRRSYDTP 120
            IR+ W  LDEMD M+ PI + WRLNERHYGAL G ++AE   ++G+EQV  WRR +D  
Sbjct: 61  TIRSQWLILDEMDAMFTPIISHWRLNERHYGALTGHSRAEMIERFGEEQVWAWRRGFDAR 120

Query: 121 PNPLTPGEERDSFGDARYAGLSREQVPLTECLKDTVARVLPAWNDAIAPAIRAGKQIIVS 180
           P  +   + R    +ARY G++RE +PL E L+DTV RV   W++ IAP ++ GK +I+S
Sbjct: 121 PPLMDVNDARAPQQEARYKGVAREALPLGESLQDTVERVRVVWDETIAPVLKQGKDVIIS 180

Query: 181 AHGNSLRALIKYLDGISDNDIVGLNIPNGQPLVYELDADLKPIKSYYLGD 230
           +HGNS RAL+K L+ + D ++   ++PN  PLVY LD DL+ ++   + D
Sbjct: 181 SHGNSQRALVKLLEDMPDEEVARFDVPNSVPLVYRLDTDLRVLERKSMTD 230


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 619,161
Number of extensions: 26145
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 3
Length of query: 248
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 167
Effective length of database: 921,564
Effective search space: 153901188
Effective search space used: 153901188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)