BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0170.p
         (164 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980182|ref|YP_001354909.1| preprotein translocase SecB sub...   265   2e-72

>gi|152980182|ref|YP_001354909.1| preprotein translocase SecB
           subunit [Janthinobacterium sp. Marseille]
          Length = 164

 Score =  265 bits (676), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 128/156 (82%), Positives = 143/156 (91%), Gaps = 4/156 (2%)

Query: 11  QPVFQIQRVYLKDLSLEQPNSPAIFLEQEAPSIEVSVDVGAEALAEGVFESTVTITVTAK 70
           QP+FQIQRVYLKDLSLEQPNSPAIFLEQE P+IEV+VDVGA+ LAEG+FESTVTITVTAK
Sbjct: 7   QPLFQIQRVYLKDLSLEQPNSPAIFLEQEQPTIEVAVDVGAQPLAEGIFESTVTITVTAK 66

Query: 71  VNDKVAFLVEGKQAGIFEIRNVPAEQLDPLLGIGCPNIIYPYLRANIADAITRAGFPPVH 130
           + DK+AFLVEGKQAGIFEIRN+P EQLDPLLGIGCPN+IYPYLRANIADAITRAGFPPVH
Sbjct: 67  IADKIAFLVEGKQAGIFEIRNIPDEQLDPLLGIGCPNVIYPYLRANIADAITRAGFPPVH 126

Query: 131 LAEINFEVFYQQRLQALAEQQG----ATLVNNGSTA 162
           L+EINFEVFYQQRL+ALA+QQ       ++ +GS A
Sbjct: 127 LSEINFEVFYQQRLEALAQQQADNSSGIVMADGSAA 162


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.133    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 342,589
Number of extensions: 13142
Number of successful extensions: 37
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 88
Effective length of database: 940,049
Effective search space: 82724312
Effective search space used: 82724312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)