BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0165.p
         (215 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981556|ref|YP_001354369.1| phosphoglycolate phosphatase [J...    54   9e-09

>gi|152981556|ref|YP_001354369.1| phosphoglycolate phosphatase
           [Janthinobacterium sp. Marseille]
          Length = 219

 Score = 53.5 bits (127), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 80/190 (42%), Gaps = 18/190 (9%)

Query: 8   PALVIFDCDGTLVDSEVVAARAWSEYVAGYGVTLSPAEALARFRGVSMKWCISHIEQLSG 67
           P  ++FD DGTL D+    A A ++     G+  +  E L        +  I     L+ 
Sbjct: 6   PQAILFDLDGTLADTAPDLAGAVNQLRIARGLEPTDYELLRPTASAGARGLIGAAFGLTP 65

Query: 68  QVLPAHFEQELRALMGGMLEQHLQPI-------NGAVEMVEQLR---LPFALASNAPHHK 117
           Q      + E   L    L+ + Q I       +G  E++ QL+   + + + +N   + 
Sbjct: 66  Q------DAEYPELRDAFLKNYEQSIAVESRLFDGVTELLAQLQAEGIVWGIVTNKVSYL 119

Query: 118 IELCLRVTGLLPHFAGRIFSAYDVQRWKPDPALFLFAAERLGVDPPRCAVVEDSLPGVQA 177
            +  +   GL    A  + S       KP PA    AA+R+G+DP  C  V D L  +QA
Sbjct: 120 TDRLVPQIGL--DHAACVISGDTASHPKPHPAPLFEAAKRIGIDPEHCWYVGDDLRDIQA 177

Query: 178 ALAAGMKVIA 187
             AAGM  IA
Sbjct: 178 GQAAGMTTIA 187


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 559,658
Number of extensions: 23391
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 136
Effective length of database: 928,958
Effective search space: 126338288
Effective search space used: 126338288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)