BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0164.p
         (384 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981762|ref|YP_001355064.1| cytochrome c assembly family pr...   620   e-179
gi|152981551|ref|YP_001354674.1| ABC-type transport system, perm...    57   2e-09

>gi|152981762|ref|YP_001355064.1| cytochrome c assembly family
           protein [Janthinobacterium sp. Marseille]
          Length = 383

 Score =  620 bits (1599), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 308/384 (80%), Positives = 347/384 (90%), Gaps = 1/384 (0%)

Query: 1   MELTQANQAYAEEQGFFRRLSIVDWIYAVLLVAGSLYAFGRFGSYMDYYEKAVLLLAAPT 60
           M+  Q  Q Y +  GFF+RL+ +DW+Y   L+A SL+A  RFG +MD YE+ +L+LAAPT
Sbjct: 1   MDAVQ-EQIYTQPPGFFKRLTALDWLYGAALLAASLFALNRFGHHMDIYEEVILVLAAPT 59

Query: 61  FAWLGWHWKPVRLLMVVIAVLSLGAIAMYGGALELADKKFFLKYMLSSQSAILWMSALFC 120
           FAWLGWHWK VR LM ++AVLSL AIAMYGGAL +AD+KFFLKY+LSSQSAILWMS LF 
Sbjct: 60  FAWLGWHWKSVRWLMALLAVLSLSAIAMYGGALAMADQKFFLKYLLSSQSAILWMSTLFL 119

Query: 121 LSTLFYWGGLATKAGTGNAIGSRLCWAAVVLGFTGLMVRWYESYLIGPDVGHIPISNLYE 180
           LST+FYWGGL T++ TG ++GS+LCWAAVV+GFTG++VRWYESYLIG DVGHIP+SNLYE
Sbjct: 120 LSTVFYWGGLITRSATGASLGSKLCWAAVVMGFTGMLVRWYESYLIGADVGHIPVSNLYE 179

Query: 181 VFILFCLITALFYLYYEQRYATRQLGAFVLTVITAAVGFLMWYTVSRDAAEIQPLVPALQ 240
           VFILFC+ITALFYLYYEQ YATRQLG FVL VI+AAVGFL+WYTV+RDAAEIQPLVPALQ
Sbjct: 180 VFILFCMITALFYLYYEQVYATRQLGPFVLLVISAAVGFLLWYTVTRDAAEIQPLVPALQ 239

Query: 241 SWWMKIHVPANFIGYGTFALASMVAVAYLLRERGILADRLPTLEVLDDVMYKAIAVGFAF 300
           SWWMKIHVPANFIGYGTFALA+MVA+AYLL+  G+L DRLP LEVLDDVMYKAIAVGFAF
Sbjct: 240 SWWMKIHVPANFIGYGTFALAAMVAIAYLLKSHGMLVDRLPALEVLDDVMYKAIAVGFAF 299

Query: 301 FTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGRTAAWWALVG 360
           FTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYA+WLHMRLMKGLRG+ AAWWA++G
Sbjct: 300 FTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYASWLHMRLMKGLRGKIAAWWAVIG 359

Query: 361 LLVTTFAFLGVNMFLSGLHSYGEL 384
           LLVTTFAFLGVNMFLSGLHSYGEL
Sbjct: 360 LLVTTFAFLGVNMFLSGLHSYGEL 383


>gi|152981551|ref|YP_001354674.1| ABC-type transport system,
           permease component [Janthinobacterium sp. Marseille]
          Length = 269

 Score = 56.6 bits (135), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 14/138 (10%)

Query: 247 HVPANFIGYGTFALASMVAVAYLLRERGILA--------------DRLPTLEVLDDVMYK 292
           H+    + Y T  +A+  AV   L+E  +                DRLP L  ++ ++++
Sbjct: 118 HIAIAMLAYSTLTIAAFHAVLMALQESKLHTRLSVQKTGWFALAIDRLPALLTMEKLLFR 177

Query: 293 AIAVGFAFFTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGRT 352
            I +GF   T+  + G +++ E +G  + W+ K  + ++ W+ +   L  R  +G RG+T
Sbjct: 178 LIGIGFFLLTLTVLSGVVFSEELFGKAFKWEHKTIFTMLSWILFGVLLAGRRWRGWRGKT 237

Query: 353 AAWWALVGLLVTTFAFLG 370
           A  + L G      A++G
Sbjct: 238 ALSFTLTGFTTLFLAYVG 255


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.329    0.140    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 923,743
Number of extensions: 38966
Number of successful extensions: 183
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 4
Length of query: 384
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 299
Effective length of database: 906,776
Effective search space: 271126024
Effective search space used: 271126024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)