BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0163.p
         (717 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981167|ref|YP_001355065.1| cytochrome C-type biogenesis tr...  1037   0.0  

>gi|152981167|ref|YP_001355065.1| cytochrome C-type biogenesis
           transmembrane protein [Janthinobacterium sp. Marseille]
          Length = 707

 Score = 1037 bits (2681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/711 (69%), Positives = 587/711 (82%), Gaps = 12/711 (1%)

Query: 3   TGSSTQGIQIRTRQRWLSEAVELVSSMRFAISLLTLIAIASVIGTVMKQNEPMPNYVNQF 62
           T +ST G +++T +RWL+++VEL+SSMRFAISLLTLI+IAS+IGTV+KQNEPM NYVNQF
Sbjct: 5   TETSTGGWELKTSRRWLADSVELLSSMRFAISLLTLISIASIIGTVLKQNEPMTNYVNQF 64

Query: 63  GPFWFEIFGKVGLYAVYSAWWFLLIMGFLVLSTSLCIARNAPKMLRDVKSWRDNVREQSL 122
           GPFWFE+F K+ LYAVYS WWFL+IMGFLV+STSLC+ RNAPKML+D++SWR+NVREQSL
Sbjct: 65  GPFWFEVFSKLNLYAVYSTWWFLVIMGFLVVSTSLCLLRNAPKMLKDMRSWRENVREQSL 124

Query: 123 RNFHHKHEWTTAEAPAEAAARLARQVAARGYQTKLADKDGGTLLAAKQGAANKWGYIFAH 182
           RNFHHK EW    + A   A+   +V A GY+TK+ +K+  TL+AAKQGAANKWGYIFAH
Sbjct: 125 RNFHHKAEWRVDISRAALTAQTLARVTANGYKTKVVEKENATLIAAKQGAANKWGYIFAH 184

Query: 183 AAIVIICLGGLLDSDLPIRFQQWFYGKSAFAGNGIISEIPERYRLGLNNPTFRGNTLIPE 242
           A+IVIICLGGLLDSDLPIR Q+  + K+ FAGNGII++IPE++RLGL NPTFRGNTLIPE
Sbjct: 185 ASIVIICLGGLLDSDLPIRVQKLLFNKTPFAGNGIIAQIPEQHRLGLGNPTFRGNTLIPE 244

Query: 243 GASSSTAIIPQKDGVMIQDLPFTIQLKRFIIDFYSTGMPKLFASEVVVRDHETGKETAAT 302
           G+SSSTAII Q+DGV+IQDLPFTIQLKRFIID+YSTGMPKLFASEVVV DHE GK   AT
Sbjct: 245 GSSSSTAIISQQDGVLIQDLPFTIQLKRFIIDYYSTGMPKLFASEVVVTDHENGKVFPAT 304

Query: 303 IKVNEPLIYKGVAIYQSSFEDGGSKLKLVGYPMRGGTNSHFDLAGEVNGSTPLPAG--MG 360
           IKVNEPLIY+GVA+YQSSFEDGGSKLK+ GYPM+G  ++ F L GEV  +TPL A     
Sbjct: 305 IKVNEPLIYRGVAVYQSSFEDGGSKLKVTGYPMQGAAHAAFSLQGEVGNTTPLAASGKNA 364

Query: 361 DYTIEWSGFRPFNVENMQAQGAGSTSGDARAVNVGKSVNRGFIADLDKHLGSSAKNANSK 420
           DYT+EWSGFR FNVENM   G      D RAVN     N+G  +  DKHLGS+AK+AN+K
Sbjct: 365 DYTVEWSGFRAFNVENMAKNGQ-----DVRAVN----PNQGLSSSFDKHLGSAAKSANNK 415

Query: 421 DFKNVGPSVQYKLRDKTGQAREYFNYMQSLPIDGADVFLAGVREQPDQPFRYLRIPADDK 480
           D KNVGPSVQYKLRD+ GQAREY NYMQ + +DGA VFLAG+RE P   FR+LRIPADD 
Sbjct: 416 DLKNVGPSVQYKLRDRNGQAREYHNYMQPVLVDGAYVFLAGMRESPADQFRFLRIPADDN 475

Query: 481 DSVAEWMRLRAALANPALREEAAHRYAQQAISGGREASPVLREQLQQSALRGLTIFAGDG 540
           D+V EWMRLRAA+ NP LRE AA RYAQ+A+   R+    LR QLQ SAL+GLTIFAGDG
Sbjct: 476 DTVDEWMRLRAAILNPQLRELAAQRYAQRALPEARDGVSALRAQLQASALKGLTIFAGDG 535

Query: 541 KVSGYIAVTRFLEQLPAAEQEKAADIFMKILNGSMWELWQAARAQDGLAPVASDEKHGRF 600
           + +GYIAV++FLE++PA +QEKAADIFMKI+NGSMW+LWQ AR ++GL PV  DEKHGRF
Sbjct: 536 QDAGYIAVSKFLERIPAQDQEKAADIFMKIMNGSMWDLWQIAREKEGLKPVELDEKHGRF 595

Query: 601 LQLAINALADAAFYPAPVFLQLSGFQEIKASVLQVTRSPGKKVVYLGCLFLVLGVFAMLY 660
           LQLA NA++DA FY APV+LQL GF E+KASVLQVTRSPGK +VY GCL LVLGVF+M Y
Sbjct: 596 LQLATNAISDAFFYGAPVYLQLQGFDEVKASVLQVTRSPGKNIVYFGCLLLVLGVFSMFY 655

Query: 661 IRERRLWIWIKPAADGQGSQALLAMSTQRRTLDFDQEFEQMKARLTGAASP 711
           IRERR+WIWIK   DG G+ A++AMS+QR+TLDF++EFE  K +L  A SP
Sbjct: 656 IRERRVWIWIKAEDDG-GAHAIMAMSSQRKTLDFEKEFEIFKQQLLQAGSP 705


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,665,159
Number of extensions: 70948
Number of successful extensions: 196
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 1,221,021
Length adjustment: 90
Effective length of query: 627
Effective length of database: 888,291
Effective search space: 556958457
Effective search space used: 556958457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)