BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0162.p
         (220 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981922|ref|YP_001355066.1| cytochrome c, class I [Janthino...   311   2e-86
gi|152981980|ref|YP_001354761.1| cytochrome C [Janthinobacterium...    98   4e-22
gi|152983024|ref|YP_001352402.1| cytochrome c553 [Janthinobacter...    60   1e-10
gi|152981960|ref|YP_001352403.1| cytochrome [Janthinobacterium s...    60   1e-10

>gi|152981922|ref|YP_001355066.1| cytochrome c, class I
           [Janthinobacterium sp. Marseille]
          Length = 219

 Score =  311 bits (797), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 142/220 (64%), Positives = 180/220 (81%), Gaps = 1/220 (0%)

Query: 1   MNRAFSPLLYTVLAAVLAVSSAAHAADDKKAPFKADPAKGEALYTNGDSARNIVACVSCH 60
           MNR   P++ ++  A+LA++S A+A++DKK   KADPAKGEALY  GD+ RN+ AC++CH
Sbjct: 1   MNRICIPIVKSLFVALLAIASTANASEDKKV-VKADPAKGEALYNTGDATRNVTACIACH 59

Query: 61  GAAGNSTITQNPKLSGQHEAYIAKQLLNFRTPERNNPVMTPMAKALSEEDIHNLAAYLSA 120
           GAAGNS+I +NPKL+GQH AYI KQL++F+ P RNN +M P+AK ++EEDI N+ AYL+ 
Sbjct: 60  GAAGNSSIAENPKLTGQHGAYIHKQLVDFKGPARNNAIMAPIAKGMTEEDIQNVIAYLAK 119

Query: 121 QEPKPGAAKNKETIELGKHIWRAGIAAKNVPACAGCHSPNGAGIPAQYPRLAGQHQDYTV 180
           Q+P PGAAKNK+T+ELGK I+R GIA KNVPACA CHS NGAG+PAQYPRLAGQHQ YT 
Sbjct: 120 QKPSPGAAKNKDTVELGKKIYRGGIAEKNVPACAACHSANGAGLPAQYPRLAGQHQTYTA 179

Query: 181 AQLTNFRGGARTNSVQMTAIAERLSDKEIKAVADYIAGLK 220
           AQL NFR G R NS  MT +A+R+SD+EI+AV+DY+AGLK
Sbjct: 180 AQLINFRNGTRKNSEPMTTVAKRMSDEEIQAVSDYVAGLK 219


>gi|152981980|ref|YP_001354761.1| cytochrome C [Janthinobacterium
           sp. Marseille]
          Length = 243

 Score = 97.8 bits (242), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 93/175 (53%), Gaps = 7/175 (4%)

Query: 50  ARNIVACVSCHGAAGNS-TITQNPKLSGQHEAYIAKQLLNFRTPERNNPVMTPMAKALSE 108
           A+ + ACV CHG  G + +    P+++G+   Y+  QL+NFR  +R  PVMT M + +S+
Sbjct: 42  AQRVAACVVCHGKEGRAGSDGYYPRIAGKPAGYLYNQLINFRDGKRTYPVMTAMLENMSD 101

Query: 109 EDIHNLAAYLSAQE---PKPGAAK-NKETIELGKHIWRAGIAAKNVPACAGCHSPNGAGI 164
             +  +A Y S Q    P+P AA+ N   +E G+ +   G  AK +PAC  CHS    G 
Sbjct: 102 AYLREIAQYFSEQHPPYPEPQAAQSNPAELERGRRLVHDGDKAKGIPACVACHSAKMTGT 161

Query: 165 PAQYPRLAGQHQDYTVAQLTNFRGGAR--TNSVQMTAIAERLSDKEIKAVADYIA 217
               P L G  +DY + Q+  ++ G R       M  I +++S ++I A A +++
Sbjct: 162 APAIPGLIGLPRDYLLGQIGAWKIGTRHAAQPDCMADIVKKMSAEDISAAAAWLS 216


>gi|152983024|ref|YP_001352402.1| cytochrome c553 [Janthinobacterium
           sp. Marseille]
          Length = 106

 Score = 60.1 bits (144), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 24/126 (19%)

Query: 1   MNRAFSPLLYTVLAAVLAVSSAAHAADDKKAPFKADPAKGEALYTNGDSARNIVACVSCH 60
           M + F+ L    LA V  +++AA    D KA                  A  +  C+ CH
Sbjct: 1   MKKLFALL---ALAGVAHITTAAEIVGDAKA-----------------GANKVSMCIGCH 40

Query: 61  GAAGNST----ITQNPKLSGQHEAYIAKQLLNFRTPERNNPVMTPMAKALSEEDIHNLAA 116
           G  G       + Q P + GQ + YIA  L  ++  +RN+P M  +A++LS++DI ++AA
Sbjct: 41  GIPGYKATFPEVYQVPMIGGQSDKYIAAALHAYKKGDRNHPSMRGIAESLSDQDIADVAA 100

Query: 117 YLSAQE 122
           Y S Q+
Sbjct: 101 YYSQQK 106


>gi|152981960|ref|YP_001352403.1| cytochrome [Janthinobacterium sp.
           Marseille]
          Length = 117

 Score = 59.7 bits (143), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 6/78 (7%)

Query: 47  GDSARNIVACVSCHGAAGNSTIT-QNPKLSGQHEAYIAKQLLNFR-----TPERNNPVMT 100
           G +A     C SCHGA   + I    P L+GQH+ Y+   L++++     +  R+NP+M 
Sbjct: 29  GKAAVTKFNCASCHGADFKTPIDPAYPILAGQHKDYLKHALVSYKRGNKASNGRSNPIME 88

Query: 101 PMAKALSEEDIHNLAAYL 118
           P+AK LS +DI N+AAYL
Sbjct: 89  PLAKQLSSQDIENIAAYL 106


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.127    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 454,948
Number of extensions: 17239
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 4
Length of query: 220
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 140
Effective length of database: 925,261
Effective search space: 129536540
Effective search space used: 129536540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 127 (53.5 bits)