BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0160.p
         (339 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980170|ref|YP_001355068.1| delta-aminolevulinic acid dehyd...   565   e-162

>gi|152980170|ref|YP_001355068.1| delta-aminolevulinic acid
           dehydratase [Janthinobacterium sp. Marseille]
          Length = 337

 Score =  565 bits (1456), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 268/337 (79%), Positives = 300/337 (89%)

Query: 3   LTDFSSNAGYPALRMRRMRRDAFSRALMAENVITSADLIYPVFVQEGQNLRTPVASLPGV 62
           ++    NA +PALRMRRMR+DAFSRA+M E+V+T+ADLIYPVF+ EG+N R  V+S+PGV
Sbjct: 1   MSKLLQNAQFPALRMRRMRKDAFSRAMMREHVVTAADLIYPVFITEGENQREKVSSMPGV 60

Query: 63  ERLSLDTLLPVAEQCVKLGVPVLALFPVIDPALKTPDGIEATNPDGLVPRVVRALKDRFP 122
           ERLS+D LL VAE+CV+L +PV+ALFPVI  +LKTPDGIEA NP+GLVPR VR LK RFP
Sbjct: 61  ERLSVDLLLSVAEECVELNIPVMALFPVIQASLKTPDGIEACNPNGLVPRAVRELKKRFP 120

Query: 123 ELGVLCDVALDPYTSHGQDGVLDDTGYILNDETLTLLVKQAQTQADAGVDVVAPSDMMDG 182
           ELG+L DVALDPYTSHGQDGVLD  GY+LNDET  +L KQA  QA+AGVD+VAPSDMMDG
Sbjct: 121 ELGILTDVALDPYTSHGQDGVLDAHGYVLNDETCAILTKQALAQAEAGVDIVAPSDMMDG 180

Query: 183 RIAAIRDMLEANGHIYTRIMAYSAKYASAFYGPFRDAVGSAANLGKGSKSTYQMDPANSD 242
           RI AIR  LE++ HIYTRIMAYSAKYASAFYGPFRDAVGS+A LGK +KSTYQMDPANSD
Sbjct: 181 RIGAIRSALESHHHIYTRIMAYSAKYASAFYGPFRDAVGSSATLGKSNKSTYQMDPANSD 240

Query: 243 EALREVALDLQEGADMVMVKPGMPYLDIVRRVKDEFRVPTFAYQVSGEYAMIKAAAQNGW 302
           EALREVALDL EGADMVMVKPGMPYLDIVRRVKDEF+VPTFAYQVSGEYAMIKAAAQ GW
Sbjct: 241 EALREVALDLAEGADMVMVKPGMPYLDIVRRVKDEFKVPTFAYQVSGEYAMIKAAAQQGW 300

Query: 303 LDHDKTMMESMMAFKRAGADGVLTYFALDIARKLKQG 339
           LDHDKTMME+M+AFKRAGADGVLTYFA DIAR+LK G
Sbjct: 301 LDHDKTMMEAMIAFKRAGADGVLTYFARDIARRLKLG 337


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 793,417
Number of extensions: 34234
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 255
Effective length of database: 910,473
Effective search space: 232170615
Effective search space used: 232170615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)