BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0154.p (314 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 81 7e-17 gi|152982593|ref|YP_001352341.1| LysR family transcriptional reg... 66 3e-12 gi|152981488|ref|YP_001352078.1| LysR family transcriptional reg... 66 3e-12 gi|152982492|ref|YP_001352911.1| LysR family transcriptional reg... 66 4e-12 gi|152979818|ref|YP_001353268.1| LysR family transcriptional reg... 65 6e-12 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 81.3 bits (199), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 63/199 (31%), Positives = 97/199 (48%), Gaps = 4/199 (2%) Query: 13 SRLHLRQLRLLIALADHGSLLKAAEQVALTQPGASKALQEIESTLGAQLFTRTNRGLEAT 72 S + LR LR + +A+ G L KAA+++ + QP S+ ++ +E LG LF R RG+E T Sbjct: 2 SSIDLRLLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMELT 61 Query: 73 ELGHCVIRYARLIQTDLTHLREEMLSIMQGHGGRLAVGTIMGAV--PLLTDALTQLLEAH 130 E G ++ ARLI + E + I G GRLAVG A P + + + Sbjct: 62 ESGQALLIDARLILEQVNTTIEGVRRISLGESGRLAVGFTESAALHPFIPAVIRAFRQKS 121 Query: 131 PTLSVEIVEDTSARLLRLLDQGRLDLAICRTSISQRPDLYDAFNIHEEELAVVASVQHPL 190 P + + + E + L+ L RLD+A R+ I L + EE+ V + H L Sbjct: 122 PGVIMAVEESNTNELVEDLRHNRLDVAFIRSPIGSAAGL-KMETMLVEEMIVALPITHRL 180 Query: 191 AA-APSLQLADLADSRWVV 208 A SL L LA+ +++ Sbjct: 181 AQRRKSLPLTALAEDDFIL 199 >gi|152982593|ref|YP_001352341.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 297 Score = 66.2 bits (160), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 79/145 (54%), Gaps = 1/145 (0%) Query: 15 LHLRQLRLLIALADHGSLLKAAEQVALTQPGASKALQEIESTLGAQLFTRTNRGLEATEL 74 + LRQLR + +A+ +AA ++ +TQP S+++Q +E+ LG QLF RT+R + T Sbjct: 3 IELRQLRHFVTVAEEMHFGRAALRLHMTQPPLSQSIQALEALLGVQLFRRTSRSVALTPA 62 Query: 75 GHCVIRYARLIQTDLTHLREEMLSIMQGHGGRLAVGTIMGA-VPLLTDALTQLLEAHPTL 133 G ++ A+ I L + M G GRL++ + A +L L + EA+P + Sbjct: 63 GIALLPEAQRILQQTAALPDLMRRAASGASGRLSLAFVSTADYSVLPHFLREFREAYPQV 122 Query: 134 SVEIVEDTSARLLRLLDQGRLDLAI 158 +++ E T+ L L QGR+D+ + Sbjct: 123 EIDLREATTDVQLDELAQGRIDVGL 147 >gi|152981488|ref|YP_001352078.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 326 Score = 65.9 bits (159), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 2/209 (0%) Query: 17 LRQLRLLIALADHGSLLKAAEQVALTQPGASKALQEIESTLGAQLFTRTNRGLEATELGH 76 LRQL++ +A H S +AAE++ LTQP S ++++E G LF + + + T G Sbjct: 6 LRQLKVFETVARHLSFSRAAEELHLTQPAVSTQVKKLEEHAGLALFEQLGKKIYLTPGGS 65 Query: 77 CVIRYARLIQTDLTHLREEMLSIMQGHGGRLAVGTIMGAVPLLTDALTQLLEAHPTLSVE 136 ++ Y+R I + M GG+L V I L + +H +++ Sbjct: 66 ELLHYSRTIIQQFQEAEDAMTQFKGITGGKLNVAVISAGDYFFPRLLVEFARSHQGVTLN 125 Query: 137 IVEDTSARLLRLLDQGRLDLAICRTSISQRPDLYDAFNIHEEELAVVASVQHPLAAAPSL 196 + LL + D+AI + + +AF H +VA+ HPL + ++ Sbjct: 126 LSVHNREGLLNQMTSNLTDIAIMVRPPTDMDTINEAFAPH--PYVIVAAPDHPLVSQKNI 183 Query: 197 QLADLADSRWVVYSANMPMRLTLEREFHD 225 ++ L +VV ++E F D Sbjct: 184 PMSRLMQEPFVVREKGSDTWHSMEDGFGD 212 >gi|152982492|ref|YP_001352911.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 65.9 bits (159), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 138/292 (47%), Gaps = 20/292 (6%) Query: 17 LRQLRLLIALADHGSLLKAAEQVALTQPGASKALQEIESTLGAQLFTRTNRGLEATELGH 76 LRQLR + +A+ G AAE + ++Q S ++++E+ LG +LF R R LE T+ GH Sbjct: 5 LRQLRAFVTVAETGKFTLAAELLGVSQSSLSLLVRDLENLLGLRLFDRHTRRLELTDAGH 64 Query: 77 CVIRYARLIQTDLTHLREEMLSIMQGHGGR--LAVGTIMGAVPLLTDALTQLLEAHPTLS 134 ++ A+ DL + E ++ GR +A G++ A ++ D L +P + Sbjct: 65 DLLPVAQKTLMDLLSVVENSRDLLALKKGRVTIAAGSLHAAT-VIPDLLKSFNRRYPGIR 123 Query: 135 VEIVEDTSARLLR-LLDQGRLDLAICRTSISQRPDLYDAFNIHEEELAVVASVQHPLAAA 193 V IVED + R +R L+ G +D+ I T L A I ++ AV+ +H L Sbjct: 124 V-IVEDVAERQVRELIVAGTVDVGIGMTLDGDNSML--AQVIGRDKYAVLMHKEHQLMRK 180 Query: 194 PSLQLADLADSRWVVYSANMPMRLTLEREFHDADLRFPLHLMETTSAFTTLSLLQKNPHF 253 ++ D+A ++ ++ +R L++ H A + L + T++ + + Sbjct: 181 KTITWQDIAATQPILLKPPSLIRTYLDQ--HLARVGITLTPAYEVALPWTMTGMVRAGVG 238 Query: 254 VALLSVDVAQFCTRFGMTRILPLKLHTRSEPY-----QLVTRRGTLLSPVAR 300 VA+++ V R G L+L T S P ++TR G LSP A+ Sbjct: 239 VAIVTTGVLPVAERMG------LELRTISAPVIERELAVLTRAGYPLSPAAQ 284 >gi|152979818|ref|YP_001353268.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 305 Score = 65.1 bits (157), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 5/183 (2%) Query: 20 LRLLIALADHGSLLKAAEQVALTQPGASKALQEIESTLGAQLFTRTNRGLEATELGHCVI 79 LRLL+A+AD GSL KAA + AS L+ E G LF R+ G+ T G V+ Sbjct: 8 LRLLVAIADAGSLSKAAASFPIALSAASNRLRHFEQRSGLTLFQRSAEGMHLTPAGRLVL 67 Query: 80 RYARLIQTDLTHLREEM--LSIMQGHGGRLAVGTIMGAVPLLTDALTQLLEAHPTLSVEI 137 AR + + +L++ + L+ + RLA GT + L AL L +P + +++ Sbjct: 68 DRARHVLLETENLKDTLRDLTGQRRITLRLA-GTTVANSTFLPAALGPFLADYPEIDLQL 126 Query: 138 VEDTSARLLRLLDQGRLDLAICRTSISQRPDLYDAFNIHEEELAVVASVQHPLAAAPSLQ 197 VE SA +L + G +++ + +++ + F ++L ++ H LA PS+Q Sbjct: 127 VEHKSADVLLAVQSGEVEVGVLDGNLATSDVIPLPFR--HDKLVLLVPSGHALAERPSVQ 184 Query: 198 LAD 200 L D Sbjct: 185 LKD 187 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 607,857 Number of extensions: 21232 Number of successful extensions: 143 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 142 Number of HSP's successfully gapped: 17 Length of query: 314 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 231 Effective length of database: 914,170 Effective search space: 211173270 Effective search space used: 211173270 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 129 (54.3 bits)