BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0153.p
         (212 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981345|ref|YP_001355069.1| antioxidant protein LsfA [Janth...   394   e-111
gi|152981222|ref|YP_001351729.1| alkyl hydroperoxide reductase s...    60   7e-11

>gi|152981345|ref|YP_001355069.1| antioxidant protein LsfA
           [Janthinobacterium sp. Marseille]
          Length = 212

 Score =  394 bits (1011), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 188/212 (88%), Positives = 200/212 (94%)

Query: 1   MTLRLGDTAPDFEQESSIGKIKFHDWAGDSWVVLFSHPADFTPVCTTELGLTAKLKPEFD 60
           MTLRLGDTAPDF Q+SSIGKIKFH+WAGDSWVVLFSHPADFTPVCTTELGLTAKLKPEFD
Sbjct: 1   MTLRLGDTAPDFTQDSSIGKIKFHEWAGDSWVVLFSHPADFTPVCTTELGLTAKLKPEFD 60

Query: 61  KRNVKAIALSVDGAEAHNQWIKDIEETQQTVVGFPIVADVDKKVAGLYDMIHPNQSETAT 120
           KRNVKAIALSVD AE H +WIKDIE TQ+TVVGFPIVAD DK V+ LYDMIHPNQS TAT
Sbjct: 61  KRNVKAIALSVDPAEKHVEWIKDIEATQKTVVGFPIVADADKSVSTLYDMIHPNQSATAT 120

Query: 121 VRSLFIIDPKKKVRLIITYPMSTGRNFDEVLRVIDALQLTDGYTVATPGNWKDGDDVIIP 180
           VRSLF+IDP+KK+RL ITYPMSTGRNFDEVLRVIDALQLTDGYTVATPGNW+DGDDVIIP
Sbjct: 121 VRSLFVIDPQKKIRLTITYPMSTGRNFDEVLRVIDALQLTDGYTVATPGNWRDGDDVIIP 180

Query: 181 LTVKDEEVIKQKYPKGYKAPRPYLRITPQPNK 212
           LTV+DE VIKQKYPKG+KA RPYLR+TPQPNK
Sbjct: 181 LTVQDEAVIKQKYPKGFKAERPYLRLTPQPNK 212


>gi|152981222|ref|YP_001351729.1| alkyl hydroperoxide reductase
           subunit C [Janthinobacterium sp. Marseille]
          Length = 187

 Score = 60.5 bits (145), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 9/153 (5%)

Query: 31  WVVLFSHPADFTPVCTTELGLTAKLKPEFDKRNVKAIALSVDGAEAHNQWIKDIEETQQT 90
           W VL   PA FT  C TE+   A    EF K   +   ++ D   +H  W     ET   
Sbjct: 33  WSVLIFMPAAFTFNCPTEVEDAADSYAEFQKLGTEVYIVTTDTHFSHKVW----HETSPA 88

Query: 91  V--VGFPIVADVDKKVAGLYDMIHPNQSETATVRSLFIIDPKKKVRLIITYPMSTGRNFD 148
           V    FP+V D   ++   + +  P   E  ++R  F+I+P   ++ +  +     R+  
Sbjct: 89  VGKAKFPLVGDPTHQLTNAFGVHIPE--EGLSLRGTFVINPDGVIKTLEIHSNEIARDVS 146

Query: 149 EVLRVIDALQLTDGY-TVATPGNWKDGDDVIIP 180
           E LR + A Q T  +     P  WK+G+  + P
Sbjct: 147 ETLRKLKAAQYTAAHPNEVCPAKWKEGEKTLAP 179


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 537,518
Number of extensions: 21386
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 2
Length of query: 212
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 133
Effective length of database: 928,958
Effective search space: 123551414
Effective search space used: 123551414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)