BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0152.p (596 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981155|ref|YP_001355070.1| thiol:disulfide interchange pro... 681 0.0 gi|152983129|ref|YP_001354754.1| thiol:disulfide interchange pro... 294 8e-81 >gi|152981155|ref|YP_001355070.1| thiol:disulfide interchange protein [Janthinobacterium sp. Marseille] Length = 600 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/584 (61%), Positives = 444/584 (76%), Gaps = 16/584 (2%) Query: 15 LLIVLALLALLGLLVAKAAQAADDYLPPEQAFQLSGRMVDAQTLELSYRIADGYYMYRDR 74 ++VL +LGLL A AA A +++L PE AFQ S RM DA T+ ++Y IADGYYMYR+R Sbjct: 22 FMLVLGCAFMLGLL-ASAAHADEEFLAPEVAFQFSARMDDAHTIAVTYAIADGYYMYRER 80 Query: 75 FHFSAEGATLGQPQFPAGKRKYDENFQKEVETYHQSVTVRVPVSGEVKDFVVLAVSQGCA 134 F F A GATLG+PQ P GK K+DE FQK+VETY +SVT+R+PV F ++A SQGC+ Sbjct: 81 FAFRATGATLGEPQIPDGKIKFDETFQKDVETYRKSVTIRIPVEASAP-FTLIATSQGCS 139 Query: 135 DKGLCYPPMTLKLSMSAQAIGQSVSPVGTGAETAASGG----SDVDRITAVLKAGKLWPI 190 DKGLCY PM + S G +V + + A TA +G S++ +I LK+GKL I Sbjct: 140 DKGLCYSPMDSEARFSVA--GGNVEVLASSASTAQAGNALPESEMGQIERSLKSGKLLAI 197 Query: 191 LTLFFLLGIGLSFTPCVLPMLPILSSIIVGQQPAKGGGRGRSFLLSLDYSLGMILIYTAL 250 L LFFLLG+GL+FTPCVLPM+PILSSIIVG+ R R F+L+L YSLGM ++YT L Sbjct: 198 LPLFFLLGLGLAFTPCVLPMVPILSSIIVGE--GTQVKRSRGFVLALVYSLGMAIVYTLL 255 Query: 251 GVVAGMLGEGLSAYLQNPWVLAAFALLMAGLALSMFDLYTLQVPASLQSRLSTASGGGS- 309 G AG++GEGL+A LQNPWVL FA+LMA LALSMFD+Y LQ+PA++Q+RL+ AS S Sbjct: 256 GTAAGLIGEGLAAALQNPWVLGTFAILMAVLALSMFDVYQLQMPAAIQTRLTQASEKQSA 315 Query: 310 GKWLGVFVMGAISALIVGPCVAAPLAGALLYISQTGDVVLGGSALFAMAAGMSVPLLLIG 369 GK +GVFVMGA+SALIVGPCVAAPLAGAL+YISQT DV++GGSALFAMA GMSVPLLL+G Sbjct: 316 GKLIGVFVMGALSALIVGPCVAAPLAGALVYISQTRDVMIGGSALFAMAIGMSVPLLLVG 375 Query: 370 ASAGALLPRAGAWMDAVKRFFGVLMLGTALWMVAPVIPAWLQVAGWAALGIGYGAFLLWT 429 SAGALLPRAG WMDAVKRFFGVLML ALWMV+PVIPA Q+ GW AL +GYGA+LLW Sbjct: 376 LSAGALLPRAGMWMDAVKRFFGVLMLAVALWMVSPVIPAVAQMLGWTALLVGYGAYLLWG 435 Query: 430 RPAGWMSRALGLAVVTLGLLQLVSVATGGRDPLAPLSHLRGQAVATGATDFVRIRSSAEL 489 GW S+A+GL V LG+LQLV VATGGRD LAPL HL+G+ F R+++ A+L Sbjct: 436 AKGGWFSKAVGLICVVLGMLQLVGVATGGRDALAPLEHLQGE--RQEKVSFKRVKTVADL 493 Query: 490 DAALQQNAAGERRPVMLDFYADWCVSCKEMERFTFTDPRVKERFGQMLLLQIDVTANNAD 549 DAAL Q + + VMLDFYADWCVSC EME+ TFTD RV+ F +M+LLQ+DVTAN+A+ Sbjct: 494 DAALVQ---AKGKHVMLDFYADWCVSCIEMEKLTFTDQRVRTHFAEMVLLQVDVTANDAE 550 Query: 550 DRAMLKRFKLFGPPGIMFFDGDGRELTSRRVIGYQDADRFISTL 593 D+AML+RF LFGPPGI+FFD G+E+ RVIG+Q+AD+F +L Sbjct: 551 DKAMLRRFNLFGPPGIIFFDKAGQEIQGGRVIGFQNADKFTQSL 594 >gi|152983129|ref|YP_001354754.1| thiol:disulfide interchange protein DsbD [Janthinobacterium sp. Marseille] Length = 591 Score = 294 bits (753), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 196/581 (33%), Positives = 317/581 (54%), Gaps = 30/581 (5%) Query: 33 AQAADDYLPPEQAFQLSGRMVDAQTLELSYRIADGYYMYRDRFHFSAEGATLGQPQF--P 90 + A +L P + +L+ L + IAD YY+YR S + A+ F P Sbjct: 20 SSAEATFLEPSEVLKLTNIESREDNLVVQTNIADQYYVYRHSL--SIKDASNNNILFVIP 77 Query: 91 AGKRKYDENFQKEVETYHQSVTVRVPVSGEVKDFVVLAVSQGCADKGLCYPPMT--LKLS 148 G+ K+DE F + E Y ++ ++R + + QGC++ G+CYPP T + Sbjct: 78 DGEAKHDEFF-GDTEIY-KNASLRFQIPNIDFKLPLTLQWQGCSEGGICYPPQTQLIHSD 135 Query: 149 MSAQAIGQS--VSPVGTGAETAASGGSDVDRITAVLKAGKLWPI--LTLFFLLGIGLSFT 204 SA + +S ++ V ET+ + + D++ A + +L P+ +F LG+ L+F Sbjct: 136 HSANEVFRSKQLAWVSDSQETSTNDKGE-DQLNA-QRLTQLGPVGASIVFLGLGLLLAFA 193 Query: 205 PCVLPMLPILSSIIVGQQPAKGGGRGRSFLLSLDYSLGMILIYTALGVVAGMLGEGLSAY 264 PC LPM+PI+S++++G + R+ L+ Y L M Y LGVV G+ G + + Sbjct: 194 PCSLPMIPIVSTMVIGTSTSVK----RNLTLTAAYVLAMASTYAVLGVVTGLAGSNVQSA 249 Query: 265 LQNPWVLAAFALLMAGLALSMFDLYTLQVPASLQSRLSTASGG-GSGKWLGVFVMGAISA 323 LQ+PW+L FA+L LA SMF + Q+P+ + ++LS+ SG G +G ++G SA Sbjct: 250 LQSPWLLGTFAVLFLILAASMFGWFEFQLPSYITNKLSSLSGNRAQGSIVGSVLLGFASA 309 Query: 324 LIVGPCVAAPLAGALLYISQTGDVVLGGSALFAMAAGMSVPLLLIGASAGALLPRAGAWM 383 ++VGPC+ APLAGALLYI QTGD GG ALF++ GM +PL LI +LP+ GAWM Sbjct: 310 ILVGPCMTAPLAGALLYIGQTGDAATGGFALFSLGLGMGLPLFLIAVFGTRILPKPGAWM 369 Query: 384 DAVKRFFGVLMLGTALWMVAPVIPAWLQVAGWAALGIGY-------GAFLLWTRPAGWMS 436 D ++ FG +M+ A++ + +P + +A LGI G+ L +R GW Sbjct: 370 DRMRVAFGYVMVAMAIYFGSRFLPDQIVLAASGMLGIAITVGTWFLGSHYLASR-KGWTF 428 Query: 437 RALGLAVVTLGLLQLVSVATGGRDPLAPLSHLRG--QAVATGATDFVRIRSSAELDAALQ 494 + + L+V +L +V A+GG L PL H + Q + + +V +S+ ++D L Sbjct: 429 KIVSLSVGLWSVLMVVGAASGGNSLLRPLGHFQAVSQTNSPSSVQYVPAKSAEDID-RLI 487 Query: 495 QNAAGERRPVMLDFYADWCVSCKEMERFTFTDPRVKERFGQMLLLQIDVTANNADDRAML 554 Q+AA + M+DFYADWCVSC E+ + +V R ++ +++ DVTA++ D+ +L Sbjct: 488 QDAATRGQSTMIDFYADWCVSCHIFEKEVLGNDQVIARLKRVQVIRPDVTAHDEHDKRLL 547 Query: 555 KRFKLFGPPGIMFFDGDGRELTSRRVIGYQDADRFISTLQN 595 R+ + GPP I+F DG+E + R +G + D+F++ L Sbjct: 548 SRWGVLGPPTIIFVGADGKEKRALRSVGEINTDQFLARLDK 588 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.139 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,211,994 Number of extensions: 47009 Number of successful extensions: 282 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 269 Number of HSP's successfully gapped: 3 Length of query: 596 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 507 Effective length of database: 891,988 Effective search space: 452237916 Effective search space used: 452237916 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 132 (55.5 bits)