BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0138.p
         (120 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980418|ref|YP_001355085.1| large subunit ribosomal protein...   215   7e-58

>gi|152980418|ref|YP_001355085.1| large subunit ribosomal protein
           L18 [Janthinobacterium sp. Marseille]
          Length = 120

 Score =  215 bits (547), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 107/120 (89%), Positives = 113/120 (94%)

Query: 1   MDKKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYASVIGPDANVLASASTLEAEVRAQ 60
           MDKKQSRLRR  QTRAKIAELKVNRLAVHRTN HIYAS+IGPDA VLASASTLEAEVR +
Sbjct: 1   MDKKQSRLRRGRQTRAKIAELKVNRLAVHRTNLHIYASIIGPDATVLASASTLEAEVRQE 60

Query: 61  LAGQTGKGGNAAAAALIGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGLKF 120
           LAGQ+GKGGN AAAAL+GKRVAEKALKAG+ EVAFDRSGFRYHGRVKA+AEAAREAGLKF
Sbjct: 61  LAGQSGKGGNVAAAALVGKRVAEKALKAGIAEVAFDRSGFRYHGRVKAVAEAAREAGLKF 120


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.127    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 243,536
Number of extensions: 9105
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 120
Length of database: 1,221,021
Length adjustment: 72
Effective length of query: 48
Effective length of database: 954,837
Effective search space: 45832176
Effective search space used: 45832176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 124 (52.4 bits)