BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0135.p
         (101 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979855|ref|YP_001355088.1| 30S ribosomal protein S14 [Jant...   194   9e-52

>gi|152979855|ref|YP_001355088.1| 30S ribosomal protein S14
           [Janthinobacterium sp. Marseille]
          Length = 120

 Score =  194 bits (493), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 94/101 (93%), Positives = 99/101 (98%)

Query: 1   MAKLALINREQKRAEMVKKYAAKRAELKAIIDDQSKSDEERYEARLKLQALPRNSAPTRQ 60
           MAKLALINREQKRA++VKKYA KRAELKAIIDDQSKS+EERYEARLKLQALPRNSAPTRQ
Sbjct: 20  MAKLALINREQKRADLVKKYAGKRAELKAIIDDQSKSEEERYEARLKLQALPRNSAPTRQ 79

Query: 61  RNRCALTGRPRGTFRKFGLGRIKVREIAMRGEIPGLTKASW 101
           RNRC LTGRPRGTFRKFGLGRIK+REIAMRGEIPG+TKASW
Sbjct: 80  RNRCTLTGRPRGTFRKFGLGRIKLREIAMRGEIPGMTKASW 120


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.132    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 199,658
Number of extensions: 6634
Number of successful extensions: 20
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 101
Length of database: 1,221,021
Length adjustment: 69
Effective length of query: 32
Effective length of database: 965,928
Effective search space: 30909696
Effective search space used: 30909696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 122 (51.6 bits)