BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0134.p
         (179 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980148|ref|YP_001355089.1| large subunit ribosomal protein...   349   7e-98

>gi|152980148|ref|YP_001355089.1| large subunit ribosomal protein L5
           [Janthinobacterium sp. Marseille]
          Length = 179

 Score =  349 bits (895), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 170/179 (94%), Positives = 175/179 (97%)

Query: 1   MARLQQFYKDKVVADLTTKYSYKSVMEVPRILKITLNMGLSEAVADKKIIEHAVGDLTKI 60
           MARLQ+FYK+KVV DLT K++YKSVMEVPRILKITLNMGLSEAVADKKIIEHAVGDLTKI
Sbjct: 1   MARLQEFYKEKVVGDLTAKFAYKSVMEVPRILKITLNMGLSEAVADKKIIEHAVGDLTKI 60

Query: 61  AGQKPVVTKARKAIAGFKIREGYPIGCMVTLRGARMYEFLDRLITVALPRVRDFRGVSGR 120
           AGQKPVVTKARKAIAGFKIREGYPIGCMVTLRGA MYEFLDR ITVALPRVRDFRGVSG+
Sbjct: 61  AGQKPVVTKARKAIAGFKIREGYPIGCMVTLRGAHMYEFLDRFITVALPRVRDFRGVSGK 120

Query: 121 AFDGRGNYNIGVKEQIIFPEIEYDKIDALRGMNISITTTAKTDDEAKALLAAFKFPFRN 179
           AFDGRGNYNIGVKEQIIFPEIEYDKIDALRGMNISITTTAKTDDEAKALLAAFKFPFRN
Sbjct: 121 AFDGRGNYNIGVKEQIIFPEIEYDKIDALRGMNISITTTAKTDDEAKALLAAFKFPFRN 179


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.139    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 343,377
Number of extensions: 13452
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 102
Effective length of database: 936,352
Effective search space: 95507904
Effective search space used: 95507904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)