BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0126.p
         (275 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980519|ref|YP_001355098.1| 50S ribosomal protein L2 [Janth...   513   e-147

>gi|152980519|ref|YP_001355098.1| 50S ribosomal protein L2
           [Janthinobacterium sp. Marseille]
          Length = 275

 Score =  513 bits (1321), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 250/275 (90%), Positives = 264/275 (96%)

Query: 1   MALVKVKPTSPGRRGMVKVVNPDLYKGRPLASLVEKKSKTAGRNNNGHITTRHIGGGHKQ 60
           MALVKVKPTSPGRRGMVKVVN DLYKGRP A L+EKKSKTAGRNNNGHITTRHIGGGHKQ
Sbjct: 1   MALVKVKPTSPGRRGMVKVVNADLYKGRPFAGLLEKKSKTAGRNNNGHITTRHIGGGHKQ 60

Query: 61  HYRVVDFRRNKDGIPAKVERIEYDPNRTAHIALLCYADGERKYIIAPKGVSVGDQLISGS 120
           HYRV+DF+R KDGIPAKVERIEYDPNRTA+IAL+ YADGER+YIIA KG++VGDQL++GS
Sbjct: 61  HYRVIDFKRTKDGIPAKVERIEYDPNRTANIALVLYADGERQYIIATKGMAVGDQLMNGS 120

Query: 121 EAPIKSGNTLPIRNIPVGTTIHCVEMLPGKGAQIARTAGAAVVLMAREGTYAQVRLRSGE 180
           EAPIKSGN LPIRNIPVGT +HCVEMLPGKGAQ+ARTAGA VVLMAREGTYAQVRLRSGE
Sbjct: 121 EAPIKSGNCLPIRNIPVGTVMHCVEMLPGKGAQMARTAGAGVVLMAREGTYAQVRLRSGE 180

Query: 181 VRRVHIECRATIGEVGNGEHNLRKIGKAGATRWRGVRPTVRGVVMNPVDHPHGGGEGKTA 240
           VRRVHIECRAT+GEVGN EH+LRKIGKAGA RWRGVRPTVRGVVMNPVDHPHGGGEGKTA
Sbjct: 181 VRRVHIECRATVGEVGNAEHSLRKIGKAGAMRWRGVRPTVRGVVMNPVDHPHGGGEGKTA 240

Query: 241 AGRHPVSPWGQQTKGKKTRSNKRTTSMIVSRRGKK 275
           AGRHPVSPWGQQTKGKKTRSNKRTTSMIVSRRGKK
Sbjct: 241 AGRHPVSPWGQQTKGKKTRSNKRTTSMIVSRRGKK 275


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 643,226
Number of extensions: 27388
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 193
Effective length of database: 917,867
Effective search space: 177148331
Effective search space used: 177148331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)