BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0125.p
         (105 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980180|ref|YP_001355099.1| 50S ribosomal protein L23 [Jant...   181   7e-48

>gi|152980180|ref|YP_001355099.1| 50S ribosomal protein L23
           [Janthinobacterium sp. Marseille]
          Length = 105

 Score =  181 bits (460), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 93/105 (88%), Positives = 97/105 (92%)

Query: 1   MNAIVKHSEERLMKVLLAPVISEKATFVAEKNEQVVFLVAKDATKLEVKAAVELLFKVEV 60
           M+AI+KHSEERLMKVLLAPVISEKATFVAEKNEQVVFLV  DATK E+KAAVELLFKV+V
Sbjct: 1   MSAILKHSEERLMKVLLAPVISEKATFVAEKNEQVVFLVMPDATKPEIKAAVELLFKVQV 60

Query: 61  ESVQVANRQGKQKRSRNGMGRRNHTRRAFVSLKPGQEINFTEEAK 105
           ESVQVANRQGKQKRS    GRRNHTRRAFV LKPGQEINFTEEAK
Sbjct: 61  ESVQVANRQGKQKRSGRFNGRRNHTRRAFVCLKPGQEINFTEEAK 105


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.128    0.329 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 184,764
Number of extensions: 5159
Number of successful extensions: 13
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 105
Length of database: 1,221,021
Length adjustment: 70
Effective length of query: 35
Effective length of database: 962,231
Effective search space: 33678085
Effective search space used: 33678085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 122 (51.6 bits)