BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0124.p
         (206 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980648|ref|YP_001355100.1| large subunit ribosomal protein...   391   e-110

>gi|152980648|ref|YP_001355100.1| large subunit ribosomal protein L4
           [Janthinobacterium sp. Marseille]
          Length = 206

 Score =  391 bits (1005), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 186/206 (90%), Positives = 197/206 (95%)

Query: 1   MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVSHTT 60
           MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEV HTT
Sbjct: 1   MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVHHTT 60

Query: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGVCSILSQLARE 120
           KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENF+HKVNKKMYRAGVCSILSQLARE
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMYRAGVCSILSQLARE 120

Query: 121 GRLSVVEEFAVEAPKTKLLAQKLKGMGMESVLVITDSLDEKLLLASRNLPGVLVVEPRQA 180
           GRLSV+E  +VEAPKTKLL+QKLKGMG++SVLVITDSLDE LLLASRNLP VL+ EPR A
Sbjct: 121 GRLSVIENLSVEAPKTKLLSQKLKGMGLDSVLVITDSLDENLLLASRNLPNVLICEPRHA 180

Query: 181 DPVSLVYFKNVLITKPALAKIEELLA 206
           DPVSLV++K +LITK ALAKIEE+LA
Sbjct: 181 DPVSLVFYKKILITKLALAKIEEMLA 206


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.131    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 458,315
Number of extensions: 17644
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 127
Effective length of database: 928,958
Effective search space: 117977666
Effective search space used: 117977666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)