BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0121.p (396 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981083|ref|YP_001355117.1| elongation factor Tu [Janthinob... 777 0.0 gi|152981101|ref|YP_001355103.1| elongation factor Tu [Janthinob... 777 0.0 gi|152980795|ref|YP_001354182.1| GTP-binding elongation factor [... 75 9e-15 gi|152979899|ref|YP_001354146.1| sulfate adenylyltransferase sub... 74 2e-14 gi|152980794|ref|YP_001354185.1| translation initiation factor I... 68 1e-12 >gi|152981083|ref|YP_001355117.1| elongation factor Tu [Janthinobacterium sp. Marseille] Length = 396 Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/396 (95%), Positives = 387/396 (97%) Query: 1 MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKAYDQIDAAPEEKARG 60 MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLSKKFGGEAK YDQID APEEKARG Sbjct: 1 MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKGYDQIDNAPEEKARG 60 Query: 61 ITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI 120 ITINT+HVEYET +RHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI Sbjct: 61 ITINTSHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI 120 Query: 121 LLSRQVGVPYIIVFLNKADMVDDEELLELVEMEVRELLSKYEFPGDDLPIVKGSAKLALE 180 LLSRQVGVPYIIVFLNKADMVDD ELLELVEMEVRELLSKYEFPGDDLPIVKGSAKLALE Sbjct: 121 LLSRQVGVPYIIVFLNKADMVDDAELLELVEMEVRELLSKYEFPGDDLPIVKGSAKLALE 180 Query: 181 GDTGPLGEQAIMALAEALDTYIPTPERAVDGTFLMPVEDVFSISGRGTVVTGRVERGIIK 240 GDTGPLGEQAI+ALA ALDTYIPTPERAVDG FL+PVEDVFSISGRGTVVTGR+ERGIIK Sbjct: 181 GDTGPLGEQAILALANALDTYIPTPERAVDGAFLLPVEDVFSISGRGTVVTGRIERGIIK 240 Query: 241 VGEEIEIVGIADTQKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVQRGQVLAKPGS 300 VGEEIEIVGI DTQKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDV+RGQVLAKPGS Sbjct: 241 VGEEIEIVGIRDTQKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVERGQVLAKPGS 300 Query: 301 IKPHKHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGAIELPKDKEMVMPGDNVS 360 IKPHKHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTG+IELPKDKEMVMPGDNVS Sbjct: 301 IKPHKHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGSIELPKDKEMVMPGDNVS 360 Query: 361 ITVQLINPIAMEEGLRFAIREGGRTVGAGVVAKIFD 396 ITV LINPIAMEEGLRFAIREGGRTVGAGVVAKI + Sbjct: 361 ITVMLINPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396 >gi|152981101|ref|YP_001355103.1| elongation factor Tu [Janthinobacterium sp. Marseille] Length = 396 Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/396 (95%), Positives = 387/396 (97%) Query: 1 MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKAYDQIDAAPEEKARG 60 MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLSKKFGGEAK YDQID APEEKARG Sbjct: 1 MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKGYDQIDNAPEEKARG 60 Query: 61 ITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI 120 ITINT+HVEYET +RHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI Sbjct: 61 ITINTSHVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI 120 Query: 121 LLSRQVGVPYIIVFLNKADMVDDEELLELVEMEVRELLSKYEFPGDDLPIVKGSAKLALE 180 LLSRQVGVPYIIVFLNKADMVDD ELLELVEMEVRELLSKYEFPGDDLPIVKGSAKLALE Sbjct: 121 LLSRQVGVPYIIVFLNKADMVDDAELLELVEMEVRELLSKYEFPGDDLPIVKGSAKLALE 180 Query: 181 GDTGPLGEQAIMALAEALDTYIPTPERAVDGTFLMPVEDVFSISGRGTVVTGRVERGIIK 240 GDTGPLGEQAI+ALA ALDTYIPTPERAVDG FL+PVEDVFSISGRGTVVTGR+ERGIIK Sbjct: 181 GDTGPLGEQAILALANALDTYIPTPERAVDGAFLLPVEDVFSISGRGTVVTGRIERGIIK 240 Query: 241 VGEEIEIVGIADTQKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVQRGQVLAKPGS 300 VGEEIEIVGI DTQKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDV+RGQVLAKPGS Sbjct: 241 VGEEIEIVGIRDTQKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVERGQVLAKPGS 300 Query: 301 IKPHKHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGAIELPKDKEMVMPGDNVS 360 IKPHKHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTG+IELPKDKEMVMPGDNVS Sbjct: 301 IKPHKHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGSIELPKDKEMVMPGDNVS 360 Query: 361 ITVQLINPIAMEEGLRFAIREGGRTVGAGVVAKIFD 396 ITV LINPIAMEEGLRFAIREGGRTVGAGVVAKI + Sbjct: 361 ITVMLINPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396 >gi|152980795|ref|YP_001354182.1| GTP-binding elongation factor [Janthinobacterium sp. Marseille] Length = 612 Score = 74.7 bits (182), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 78/279 (27%), Positives = 125/279 (44%), Gaps = 25/279 (8%) Query: 14 NVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKAYDQIDAAPE-----EKARGITINTAHV 68 N+ I HVDHGKTTL + + G + Q+DA EK RGITI + + Sbjct: 10 NIAIIAHVDHGKTTLVDQLL-----RQSGTFRENQQVDARVMDSNDIEKERGITILSKNC 64 Query: 69 EYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLSRQVGV 128 E H VD PGHAD+ + + +D +L+ A +GPMPQTR + +G+ Sbjct: 65 AVEYKGTHINIVDTPGHADFGGEVERVLSMVDSVLLLVDAQEGPMPQTRFVTRKALALGL 124 Query: 129 PYIIVFLNKADMVDDEELLELVEMEVRELLSKYEFPGD--DLPIVKGSAKLALEGDTGPL 186 I+V +NK D ++ + + V EL K + D PIV S G + Sbjct: 125 KPIVV-VNKIDR-ENADPQKAVNATF-ELFDKLGATDEQLDFPIVYASGFKGYAGLEDTV 181 Query: 187 GEQAIMALAEALDTYIPTPERAVDGTFLMPVEDVFSISGRGTVVTGRVERGIIKVGEEIE 246 + + L +A+ ++P E D + + + S G + GR+ G +K +++ Sbjct: 182 RDGNMEPLFDAILEHVPAREDDPDAPLQLQITSLEYSSYVGKIGVGRILAGRVKALQDVV 241 Query: 247 IVGIADTQKT--------TCTGVEMFRKLLDQGQAGDNV 277 + + + T T G++ R L+D+ AGD V Sbjct: 242 WMNGPEDKPTKARINQVLTFKGLD--RVLVDEALAGDIV 278 >gi|152979899|ref|YP_001354146.1| sulfate adenylyltransferase subunit 1 [Janthinobacterium sp. Marseille] Length = 443 Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 94/407 (23%), Positives = 172/407 (42%), Gaps = 71/407 (17%) Query: 17 TIGHVDHGKTTLTAAIATVLSKKFGGEAKAYDQIDAAPE--------------------- 55 T G VD GK+TL + F + DQ+DA Sbjct: 27 TAGSVDDGKSTLIGRLL------FDSKGIFADQLDAMSRAKHKRTVGDTIDLSLLTDGLE 80 Query: 56 -EKARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAA----- 109 E+ +GITI+ A+ + T R + D PGH Y +NM+TGA+ D I++ + Sbjct: 81 AEREQGITIDVAYRYFATPKRKFIIADTPGHEQYTRNMVTGASTADAVIILIDVSKVKLG 140 Query: 110 -DGP---MPQTREHILLSRQVGVPYIIVFLNKADMVD-DEELLELV---EMEVRELLSKY 161 DG + QT+ H ++ + + ++IV +NK D+V+ D+ + + + E + L Sbjct: 141 DDGSVELLIQTKRHSTIAHLLQIEHVIVAVNKMDLVNYDQTVYDRIVAAYAEFAKTLGLK 200 Query: 162 EFPGDDLPIVKGSAKLALEGDTGPLGEQAIMALAEALDTYIPTPERAVDGTFLMPVEDVF 221 + L + G +A G+ ++ L E+L Y + + D F PV+ V Sbjct: 201 DIRPIPLSALTGDNVVASGGNMPWYQGPTLIELLESLSVY----DESHDEPFRFPVQLVA 256 Query: 222 SISG------RGTVVTGRVERGIIKVGEEIEIVGIADTQKTTCTGVEMFRKLLDQGQAGD 275 +G RG + GR+E G + G+++ I Q T ++ L+Q G Sbjct: 257 RHNGHEADDFRGYM--GRIEAGKVSKGDKLVIQ--PSGQTATVKDIQTLDGSLEQAVVGQ 312 Query: 276 NVGVLLRGTKREDVQRGQVLA---KPGSIKPHKHFTGEIYVLSKDE-GGRHTPFFNNYRP 331 ++ +LL + D+ RG +L+ +P + K ++ LS++ R + + Sbjct: 313 SITLLLE--EYVDISRGDMLSAANRPAELL--KTVNADLCWLSEEPLDTRRKYWLKHTTR 368 Query: 332 QFYFRTTDVTGAIELPKDKEMVMPGDNVS------ITVQLINPIAME 372 Q R T + +++ ++ P D V +T+ + P+A + Sbjct: 369 QVAARVTKIDTLLDINTQEK--RPADEVKLNGIARVTLNVAQPLAAD 413 >gi|152980794|ref|YP_001354185.1| translation initiation factor IF-2 [Janthinobacterium sp. Marseille] Length = 937 Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 104/230 (45%), Gaps = 29/230 (12%) Query: 15 VGTIGHVDHGKTTLTAAIATVLSKKFGGEAKAYDQIDAAPEEKARGITINTAHVEYETAN 74 V +GHVDHGKT+L I +K GEA GIT + ET Sbjct: 442 VTVMGHVDHGKTSLLDYIRR--AKVASGEAG--------------GITQHIGAYHVETPR 485 Query: 75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLSRQVGVPYIIVF 134 +D PGH + GA D ILV +A DG MPQT+E I ++ GVP ++V Sbjct: 486 GMITFLDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTKEAIAHAKAAGVP-LVVA 544 Query: 135 LNKADMVDDEELLELVEME-VRELLSKYEFPGDDLPIVKGSAKLALEGDTGPLGEQAIMA 193 +NK D ++ V+ E + E + E+ GD P V SAK EG L EQ ++ Sbjct: 545 INKIDKPGAN--MDRVKQELIAEQVVPEEYGGDS-PFVPVSAKTG-EG-IDALLEQVLLQ 599 Query: 194 LAEALDTYIPTPERAVDGTFLMPVEDVFSISGRGTVVTGRVERGIIKVGE 243 AE L+ P VD V + GRG V T V+ G +K G+ Sbjct: 600 -AEVLELKAP-----VDAPARGLVVEAKLDKGRGPVATILVQSGTLKRGD 643 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 865,379 Number of extensions: 33402 Number of successful extensions: 105 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 99 Number of HSP's successfully gapped: 8 Length of query: 396 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 311 Effective length of database: 906,776 Effective search space: 282007336 Effective search space used: 282007336 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)