BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0120.p (701 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980195|ref|YP_001355104.1| EF-G elongation factor [Janthin... 1293 0.0 gi|152979791|ref|YP_001352764.1| peptide chain release factor 3 ... 162 4e-41 gi|152980795|ref|YP_001354182.1| GTP-binding elongation factor [... 99 6e-22 gi|152981046|ref|YP_001353057.1| GTP-binding protein LepA [Janth... 92 1e-19 gi|152981083|ref|YP_001355117.1| elongation factor Tu [Janthinob... 60 6e-10 >gi|152980195|ref|YP_001355104.1| EF-G elongation factor [Janthinobacterium sp. Marseille] Length = 702 Score = 1293 bits (3345), Expect = 0.0, Method: Compositional matrix adjust. Identities = 621/700 (88%), Positives = 659/700 (94%) Query: 1 MARKTPIERYRNIGISAHIDAGKTTTTERILYYTGVNHKIGEVHDGAATMDWMEQEQERG 60 MARKTPIERYRNIGISAHIDAGKTTTTER+L+YTGVNHK+GEVHDGAATMDWMEQEQERG Sbjct: 1 MARKTPIERYRNIGISAHIDAGKTTTTERVLFYTGVNHKLGEVHDGAATMDWMEQEQERG 60 Query: 61 ITITSAATTCFWKGMANNFPEHHINIIDTPGHVDFTIEVERSMRVLDGACMVYCAVGGVQ 120 ITITSAATTCFWKGMA NFP HHINIIDTPGHVDFTIEVERSMRVLDGACMVYCAVGGVQ Sbjct: 61 ITITSAATTCFWKGMAGNFPAHHINIIDTPGHVDFTIEVERSMRVLDGACMVYCAVGGVQ 120 Query: 121 PQSETVWRQANKYGVPRLAFVNKMDRTGANFFKVYEQMRSRLKANPIPIQVPIGAEDNFE 180 PQSETVWRQANKY VPRLAFVNKMDRTGANFFKVY+QMR+RLKANP+P+QVPIGAED+FE Sbjct: 121 PQSETVWRQANKYKVPRLAFVNKMDRTGANFFKVYDQMRARLKANPVPMQVPIGAEDSFE 180 Query: 181 GVIDLVKMRAIYWDDASQGMKFDYRDIPENLKATAQEWREKMVETAAESSEDLMNKYLEE 240 GVIDLVKM+AI WDDASQGMKF+Y DIPE+L A A++WRE MVE AAE+SE+LMNKYLEE Sbjct: 181 GVIDLVKMKAIIWDDASQGMKFEYGDIPEHLLADAKKWRENMVEAAAEASEELMNKYLEE 240 Query: 241 GDLSEEDVKKALRARTLAGEIVPMMCGTAFKNKGVQAMLDAVIEYLPAPTDIPPVKGIAE 300 GDLSE D+K A+R RT+A EIVPMMCGTAFKNKGVQAMLD V+EYLP+P DIPPV G+ E Sbjct: 241 GDLSEADIKAAIRQRTIASEIVPMMCGTAFKNKGVQAMLDGVVEYLPSPVDIPPVPGLNE 300 Query: 301 DETETVRKAADDEKFSALAFKIMTDPFVGQLIFFRVYSGVVNSGDTVYNPVKNKKERLGR 360 D+ VRKA D EKFSALAFKI TDPFVGQL F R YSG +NSGDTV+N VK KKER+GR Sbjct: 301 DDEPVVRKAEDTEKFSALAFKIATDPFVGQLCFIRCYSGTLNSGDTVFNSVKEKKERIGR 360 Query: 361 ILQMHANQREEIKEVRAGDIAAAVGLKEATTGDTLCDPSAIVTLERMVFPEPVISQAVEP 420 I+QMHANQREEIKE+ AGDIAA VGLK+ TTGDTLCD AIV LERM+FPEPVISQAVEP Sbjct: 361 IVQMHANQREEIKEMLAGDIAAIVGLKDTTTGDTLCDDKAIVVLERMIFPEPVISQAVEP 420 Query: 421 KTKADQEKMGLALNRLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMRREFGVEAT 480 KTKADQEKMGLALNRLA EDPSFRV+TDEESGQTII+GMGELHLDIIVDRM+REFGVEAT Sbjct: 421 KTKADQEKMGLALNRLAAEDPSFRVRTDEESGQTIIAGMGELHLDIIVDRMKREFGVEAT 480 Query: 481 VGKPQVAYRETIRKTCDEIEGKFVKQSGGRGQYGHVVLKIEPQEPGAGFEFVDAIKGGVV 540 VGKPQVAYRETIRK C+EIEGKFVKQSGGRGQYGHVVLKIEPQEPG GFEF+DAIKGG V Sbjct: 481 VGKPQVAYRETIRKVCEEIEGKFVKQSGGRGQYGHVVLKIEPQEPGKGFEFIDAIKGGTV 540 Query: 541 PREFIPAVEKGIRETLNTGVLAGYPVVDVKVTLFFGSYHDVDSNENAFRMAGSMAFKDGC 600 PRE+IPAVEKG+RETL +GVLAGYPVVDVKVTLFFGSYHDVDSNENAFRMA SMAFKDGC Sbjct: 541 PREYIPAVEKGVRETLTSGVLAGYPVVDVKVTLFFGSYHDVDSNENAFRMAASMAFKDGC 600 Query: 601 RKASPVILEPMMAVEVETPEDYAGTVMGDLSSRRGMVQGMDEIAGGGGKIIKAEVPLSEM 660 RKASPVILEPMMAVEVETPEDYAGTVMGDLSSRRGMVQGMDEIAGGGGKIIKAEVPLSEM Sbjct: 601 RKASPVILEPMMAVEVETPEDYAGTVMGDLSSRRGMVQGMDEIAGGGGKIIKAEVPLSEM 660 Query: 661 FGYSTSLRSATQGRATYTMEFKHYSEAPKNVIDAIVTSKA 700 FGYSTSLRSATQGRATY+MEFKHYSEAPKNVIDAIVTSKA Sbjct: 661 FGYSTSLRSATQGRATYSMEFKHYSEAPKNVIDAIVTSKA 700 >gi|152979791|ref|YP_001352764.1| peptide chain release factor 3 [Janthinobacterium sp. Marseille] Length = 556 Score = 162 bits (411), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 135/514 (26%), Positives = 235/514 (45%), Gaps = 44/514 (8%) Query: 7 IERYRNIGISAHIDAGKTTTTERILYYTGVNHKIGEVHDGA----ATMDWMEQEQERGIT 62 + R R GI +H DAGKTT TE++L ++G G V AT DWM+ E++RGI+ Sbjct: 32 VARRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVKGRKSGRHATSDWMDIEKQRGIS 91 Query: 63 ITSAATTCFWKGMANNFPEHHINIIDTPGHVDFTIEVERSMRVLDGACMVYCAVGGVQPQ 122 + S+ M + +H +N++DTPGH DF+ + R + +D A MV A GV+ Q Sbjct: 92 VASSV-------MQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVEEQ 144 Query: 123 SETVWRQANKYGVPRLAFVNKMDRTGANFFKVYEQMRSRLKANPIPIQVPIGAEDNFEGV 182 + + P + F+NK+DR + ++ +++ S LK P+ PIG NF GV Sbjct: 145 TIKLLNVCRMRNTPIITFMNKLDRETRDPLELLDELESVLKIECAPVTWPIGMGKNFRGV 204 Query: 183 IDLVKMRAIYWDDASQGMKFDYRDIPENLKATAQEWREKMVETAAESSEDL-MNKYLEEG 241 L++ + + ++ + E +K ++ E + E L M L G Sbjct: 205 YHLLRDEIMLFAAGNEKADQTF----EVIKGIDN---PRLAEMFPQEIEQLKMEVELVHG 257 Query: 242 DLSEEDVKKALRARTLAGEIVPMMCGTAFKNKGVQAMLDAVIEYLPAPTDIPPVKGIAED 301 ++ L G P+ G+A N GV+ +L+A++++ P + Sbjct: 258 ASHPFELDAFLN-----GTRTPVFFGSAINNFGVREILNALLDWAQPP----------RE 302 Query: 302 ETETVRKAADDE-KFSALAFKIMT--DP-FVGQLIFFRVYSGVVNSGDTVYNPVKNKKER 357 TVR E FS FKI DP ++ F RV SG G + + N++ + Sbjct: 303 RDATVRSVKPTELPFSGFVFKIQANMDPAHRDRIAFLRVCSGRFERGMKIKHLRLNREIK 362 Query: 358 LGRILQMHANQREEIKEVRAGDIAAAVGLKEATTGDTLCDPSAIVTLERMVFPEPVISQA 417 + ++ A+ RE+++E AGDI GD+ + ++ + + P ++ Sbjct: 363 VSSVVTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSE-GELLQFTGIPYFAPDFFRS 421 Query: 418 VEPKTKADQEKMGLALNRLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMRREFGV 477 V + +++ L +L +E + +V S I+ G+G L +++ R+ E+GV Sbjct: 422 VRIRNPLKIKQLHKGLQQLGEEG-AIQVFKPVNSSDLILGGVGVLQFEVVASRLLNEYGV 480 Query: 478 EATVGKPQVAYRETIRKTCDE--IEGKFVKQSGG 509 +A ++ I TCD+ + +F K S G Sbjct: 481 DAVFEGTSISSARWI--TCDDKKMLAEFEKSSAG 512 >gi|152980795|ref|YP_001354182.1| GTP-binding elongation factor [Janthinobacterium sp. Marseille] Length = 612 Score = 99.4 bits (246), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 64/174 (36%), Positives = 91/174 (52%), Gaps = 12/174 (6%) Query: 11 RNIGISAHIDAGKTTTTERILYYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTC 70 RNI I AH+D GKTT +++L +G + +V A MD + E+ERGITI S Sbjct: 9 RNIAIIAHVDHGKTTLVDQLLRQSGTFRENQQVD--ARVMDSNDIEKERGITILSKNCAV 66 Query: 71 FWKGMANNFPEHHINIIDTPGHVDFTIEVERSMRVLDGACMVYCAVGGVQPQSETVWRQA 130 +KG HINI+DTPGH DF EVER + ++D ++ A G PQ+ V R+A Sbjct: 67 EYKGT-------HINIVDTPGHADFGGEVERVLSMVDSVLLLVDAQEGPMPQTRFVTRKA 119 Query: 131 NKYGVPRLAFVNKMDRTGANFFKVYE---QMRSRLKANPIPIQVPIGAEDNFEG 181 G+ + VNK+DR A+ K ++ +L A + PI F+G Sbjct: 120 LALGLKPIVVVNKIDRENADPQKAVNATFELFDKLGATDEQLDFPIVYASGFKG 173 Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 111/233 (47%), Gaps = 33/233 (14%) Query: 271 KNKGVQAMLDAVIEYLPAPTDIPPVKGIAEDETETVRKAADDEKFSALAFKIMTDPFVGQ 330 ++ ++ + DA++E++PA D P A + ++L + +VG+ Sbjct: 182 RDGNMEPLFDAILEHVPAREDDP--------------DAPLQLQITSLEYS----SYVGK 223 Query: 331 LIFFRVYSGVVNS-GDTVY-NPVKNK--KERLGRILQMHANQREEIKEVRAGDIAAAVGL 386 + R+ +G V + D V+ N ++K K R+ ++L R + E AGDI G+ Sbjct: 224 IGVGRILAGRVKALQDVVWMNGPEDKPTKARINQVLTFKGLDRVLVDEALAGDIVLINGI 283 Query: 387 KEATTGDTLCDPSAIVTLERMVFPEPVISQ--AVEPKTKADQEKMGLAL----NRLAQE- 439 +E + G T+C A L + EP ++ V A +E + +RL +E Sbjct: 284 EEISIGSTICAVDAPNGLPMLKVDEPTLTMNFMVNSSPLAGREGKFVTTRQIRDRLEKEL 343 Query: 440 --DPSFRVKTDEESGQTI-ISGMGELHLDIIVDRMRREFGVEATVGKPQVAYR 489 + + RV E+ T +SG GELHL I+++ MRRE G E V +P+V ++ Sbjct: 344 KANMALRVVQSEDDDSTYEVSGRGELHLTILIENMRRE-GFEMAVSRPRVVFK 395 >gi|152981046|ref|YP_001353057.1| GTP-binding protein LepA [Janthinobacterium sp. Marseille] Length = 597 Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 53/140 (37%), Positives = 78/140 (55%), Gaps = 5/140 (3%) Query: 11 RNIGISAHIDAGKTTTTERILYYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTC 70 RN I AHID GK+T +RI+ G + + A +D M+ E+ERGITI + Sbjct: 5 RNFSIIAHIDHGKSTLADRIIQLCG---GLSDREMEAQVLDSMDIERERGITIKAQTAAL 61 Query: 71 FWKGMANNFPEHHINIIDTPGHVDFTIEVERSMRVLDGACMVYCAVGGVQPQSETVWRQA 130 +K A + +++N+IDTPGHVDF+ EV RS+ +GA +V A GV+ Q+ A Sbjct: 62 MYK--ARDGQVYNLNLIDTPGHVDFSYEVSRSLSACEGALLVVDASQGVEAQTVANCYTA 119 Query: 131 NKYGVPRLAFVNKMDRTGAN 150 GV + +NK+D A+ Sbjct: 120 LDLGVEVVPVLNKIDLPSAD 139 >gi|152981083|ref|YP_001355117.1| elongation factor Tu [Janthinobacterium sp. Marseille] Length = 396 Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 10/135 (7%) Query: 12 NIGISAHIDAGKTTTTERILYYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCF 71 N+G H+D GKTT T I T ++ K G G +D +E+ RGITI ++ Sbjct: 14 NVGTIGHVDHGKTTLTAAIA--TVLSKKFGGEAKGYDQIDNAPEEKARGITINTSH---- 67 Query: 72 WKGMANNFPEHHINIIDTPGHVDFTIEVERSMRVLDGACMVYCAVGGVQPQSETVWRQAN 131 + H +D PGH D+ + +DGA +V A G PQ+ + Sbjct: 68 ---VEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLSR 124 Query: 132 KYGVPR-LAFVNKMD 145 + GVP + F+NK D Sbjct: 125 QVGVPYIIVFLNKAD 139 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,587,918 Number of extensions: 66727 Number of successful extensions: 204 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 192 Number of HSP's successfully gapped: 8 Length of query: 701 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 611 Effective length of database: 888,291 Effective search space: 542745801 Effective search space used: 542745801 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)