BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0117.p
         (374 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980346|ref|YP_001355107.1| hemin transport protein [Janthi...   382   e-107

>gi|152980346|ref|YP_001355107.1| hemin transport protein
           [Janthinobacterium sp. Marseille]
          Length = 374

 Score =  382 bits (982), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/343 (55%), Positives = 239/343 (69%), Gaps = 6/343 (1%)

Query: 31  LQQAQPKLHTRDAARELGVSEAQLLATQIGHGAQRLRASEQDIQALLERLPELGRIKAIT 90
           LQ  QP L  RD A++LGVSEA+LLA  IG GA  LR+     +AL  R+ ELGRIKAIT
Sbjct: 36  LQAEQPGLFARDIAQKLGVSEAKLLAADIGRGATLLRSDVATYKALFNRMHELGRIKAIT 95

Query: 91  RNEDAVLERAGEVTPVRRDEQGRVVPGTGFAGGPIDLRFGNARWGSAFAVVQAGRAGKTS 150
           RNE+ V+ER     P + DEQGRV PG+GF G  IDLRF    WG AFAVV     G+TS
Sbjct: 96  RNENGVIERTAVALPPKLDEQGRVKPGSGFVGTEIDLRFKMDSWGYAFAVVAPRAGGRTS 155

Query: 151 RSLQLFDRQGNAVHKVYLDNEQHVAQFDQLVADFRMADQHAALTVEPAAPPALPAAAATP 210
           RSLQ FD+ G A+HKVYL++E+ V  F++LVA+++ ADQ    TV   A PA P      
Sbjct: 156 RSLQFFDKNGEAIHKVYLNDEKGVPAFEKLVAEYKAADQKPDWTV-AVAKPAKPLTDMN- 213

Query: 211 SAEAIRELRQSWQELTDVHQFPRLLRELKLTREQALQLIGPESAWRIRPQAAQALLEEAK 270
               I+ELR +W E+TDVH+F RL+ +  ++RE+A +LIG ++A++I  ++ + LLE A 
Sbjct: 214 ----IKELRSAWYEMTDVHEFQRLINDFGISRERAFELIGTDAAYKITGKSVETLLETAS 269

Query: 271 ARQQPIMVFVSNGGMTQIYSGLIGKTATVGEWYNVLDPDFNLHLRASAVDHGWVVRRPTD 330
            R+QPIMVFVSN GM QIYSGLI KT     W+NVLDPDF+LHLR S VDHGWVVRRP  
Sbjct: 270 KREQPIMVFVSNPGMVQIYSGLIEKTEAKNGWFNVLDPDFDLHLRQSGVDHGWVVRRPAR 329

Query: 331 HGMVTSVEFYDAQGRQIVNFFSRRERGQPETGQWRQMVEALPR 373
            G +TSVEFYD +G Q+VNFFSRR++G+ ET  WR +V +L R
Sbjct: 330 SGTITSVEFYDTKGEQVVNFFSRRDQGKEETKVWRDIVGSLTR 372


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.132    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 775,311
Number of extensions: 29737
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 289
Effective length of database: 906,776
Effective search space: 262058264
Effective search space used: 262058264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)