BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0114.p (1368 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980439|ref|YP_001355110.1| DNA-directed RNA polymerase, be... 2387 0.0 >gi|152980439|ref|YP_001355110.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit [Janthinobacterium sp. Marseille] Length = 1240 Score = 2387 bits (6186), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1153/1240 (92%), Positives = 1200/1240 (96%) Query: 129 MGELPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARIIPYRGSW 188 MGELPLMT+TGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARIIPYRGSW Sbjct: 1 MGELPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARIIPYRGSW 60 Query: 189 LDFEFDPKDILFFRVDRRRKMPVTILLKAIGMTSEQILANFFVFDNFNLHAEGADMEFVS 248 LD+EFDPKDILFFRVDRRRKMPVTILLKAIGMT EQIL NFFVFD+F LHA+GA+M FV+ Sbjct: 61 LDYEFDPKDILFFRVDRRRKMPVTILLKAIGMTPEQILENFFVFDDFALHADGAEMAFVA 120 Query: 249 ERLRGEVARFDITDKSGKVMVAKDKRINAKHVRDIEAAGIKHISVPEDYLLGRVLAKNIV 308 ERLRGEVARFDITDK+GKV+VAKDKRIN+KHVRD+EAAGIK+ISVPEDYLLGR+LAKNIV Sbjct: 121 ERLRGEVARFDITDKAGKVLVAKDKRINSKHVRDVEAAGIKNISVPEDYLLGRILAKNIV 180 Query: 309 DPDTGEVVASANDELTEELLAKLREANISAIQTLYTNDLDQGGYISQTLRTDDTADQTAA 368 D +TGEV+A+ANDELTE+LLA+LRE ++ IQTLYTNDLDQGGYISQTLR DDT DQ AA Sbjct: 181 DKETGEVIANANDELTEDLLARLREGKVTHIQTLYTNDLDQGGYISQTLRMDDTTDQMAA 240 Query: 369 RVAIYRMMRPGEPPTEESVEALFNGLFYSEDRYDLSAVGRMKFNRRVGRDELTGTMTLSN 428 +VAIYRMMRPGEPPTE+SVEALFNGLFY+ DRYDLSAVGRMKFNRR+GRDELTG MTLSN Sbjct: 241 KVAIYRMMRPGEPPTEDSVEALFNGLFYNADRYDLSAVGRMKFNRRIGRDELTGDMTLSN 300 Query: 429 DDILAVIKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERAVKERLGQA 488 DD+LAVIKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERAVKERLGQA Sbjct: 301 DDVLAVIKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERAVKERLGQA 360 Query: 489 EADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRER 548 EADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRER Sbjct: 361 EADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRER 420 Query: 549 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRKVEGSKVTNQ 608 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRKVEGSK+T+Q Sbjct: 421 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRKVEGSKITDQ 480 Query: 609 IDYLSAIEEGRYVIAQANATIDGEGKLSDELVSAREAGETILVSPERVQYMDVAPGQVVS 668 IDYLSAIEEGRY+IAQANATID G LSDELVSAREAGETILVSPERVQYMDVAPGQVVS Sbjct: 481 IDYLSAIEEGRYIIAQANATIDKSGALSDELVSAREAGETILVSPERVQYMDVAPGQVVS 540 Query: 669 VAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGIERTVAVDSGTTVQALRGG 728 VAASLIPFLEHDDANRALMGANMQRQAVPCLRPEK VGTGIERTVAVDSGTTVQALRGG Sbjct: 541 VAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKAFVGTGIERTVAVDSGTTVQALRGG 600 Query: 729 VVDYVDAGRVVIRVNDDEAQAGEVGVDIYNLIKYTRSNQNTNINQRPIVKIGDRVAKHDV 788 +VDY+DAGRVVIRVNDDEAQAGEVGVDIYNLIKYTRSNQNTNINQRPIV++GDRVAKHDV Sbjct: 601 IVDYIDAGRVVIRVNDDEAQAGEVGVDIYNLIKYTRSNQNTNINQRPIVQVGDRVAKHDV 660 Query: 789 IADGASTDMGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIEELSVVARD 848 IADGASTD+GELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIEELSVVARD Sbjct: 661 IADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIEELSVVARD 720 Query: 849 TKLGAEEITRDISNLAENQLARLDESGIVYIGAEVEAGDTLVGKVTPKGETQLTPEEKLL 908 TKLGAEEITRDISNLAENQLARLDESGIVYIGAEV AGDTLVGKVTPKGETQLTPEEKLL Sbjct: 721 TKLGAEEITRDISNLAENQLARLDESGIVYIGAEVTAGDTLVGKVTPKGETQLTPEEKLL 780 Query: 909 RAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIQRDKRAQQIIDDELKRYRLDLND 968 RAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGI RDKRAQQIIDDEL+RYRLDLND Sbjct: 781 RAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIPRDKRAQQIIDDELQRYRLDLND 840 Query: 969 QLRIVEGDAFQRLERLLIGKVANGGPKKLVKGTKLDKAYLDDLDKFHWFDIRPADDDIAN 1028 QLRIVEGDAFQRLE++LIGKV NGGPKK+ KG K+ K YLDDLDK+HWFDIRPADD AN Sbjct: 841 QLRIVEGDAFQRLEKMLIGKVVNGGPKKIAKGAKITKEYLDDLDKYHWFDIRPADDTSAN 900 Query: 1029 ALEAIKESIAEKRHQFDLAFEEKRKKLTQGDELPPGVQKMVKVYLAVKRRLQPGDKMAGR 1088 ALEAIKESIAEKRHQFDLAFEEKRKKLTQGDELPPGVQKMVKVYLAVKRRLQPGDKMAGR Sbjct: 901 ALEAIKESIAEKRHQFDLAFEEKRKKLTQGDELPPGVQKMVKVYLAVKRRLQPGDKMAGR 960 Query: 1089 HGNKGVVSRILPIEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHLGWAAKGLGLRLG 1148 HGNKGVVSRILPIEDMPHMADGTPAD+VLNPLGVPSRMNVGQVLEVHLGWAAKGLGLR+G Sbjct: 961 HGNKGVVSRILPIEDMPHMADGTPADVVLNPLGVPSRMNVGQVLEVHLGWAAKGLGLRIG 1020 Query: 1149 EMVQAQAKVAELRKFLTTIYNESGKQEELDSFTDEEIIELVTNLKKGVPFATPVFDGAHE 1208 EM+ AQ ++AELRKFL IYNESGK E+LDSF+D EI+EL NLK GVPFATPVFDGA E Sbjct: 1021 EMLNAQVQIAELRKFLAAIYNESGKTEDLDSFSDAEILELAGNLKNGVPFATPVFDGADE 1080 Query: 1209 EETRRMLDLAYPDPIAKQLGMTPSKNQVTMYDGRTGEAFERTVTVGYMHYLKLHHLVDDK 1268 ETRRMLDLAYPD IAKQLGMT SKNQVTMYDGRTGEAFERTVTVGYMHYLKLHHLVDDK Sbjct: 1081 GETRRMLDLAYPDHIAKQLGMTASKNQVTMYDGRTGEAFERTVTVGYMHYLKLHHLVDDK 1140 Query: 1269 MHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSDDVNGRT 1328 MHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSDDVNGRT Sbjct: 1141 MHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSDDVNGRT 1200 Query: 1329 KVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLERE 1368 KVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLER+ Sbjct: 1201 KVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLERD 1240 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 3,154,899 Number of extensions: 138750 Number of successful extensions: 388 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 387 Number of HSP's successfully gapped: 1 Length of query: 1368 Length of database: 1,221,021 Length adjustment: 95 Effective length of query: 1273 Effective length of database: 869,806 Effective search space: 1107263038 Effective search space used: 1107263038 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 136 (57.0 bits)