BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0113.p
         (125 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980013|ref|YP_001355111.1| 50S ribosomal protein L7/L12 [J...   153   3e-39

>gi|152980013|ref|YP_001355111.1| 50S ribosomal protein L7/L12
           [Janthinobacterium sp. Marseille]
          Length = 124

 Score =  153 bits (386), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 108/125 (86%), Positives = 117/125 (93%), Gaps = 1/125 (0%)

Query: 1   MAISKEDILEAVGALSVMELNDLVKAFEEKFGVSAAAMAAPSSGGPGNGPAAAEEQTEFT 60
           MAISK+DILEAVG L+V+ELNDLVKAFEEKFGVSAAAMAAP++GG     AAAEEQTEFT
Sbjct: 1   MAISKDDILEAVGNLTVLELNDLVKAFEEKFGVSAAAMAAPAAGGAAG-GAAAEEQTEFT 59

Query: 61  VVLAEVGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEGVAKADAEAAKKKLEEAGA 120
           VVLA+ GANKVGVIKAVREITGLGLKEAKDLVD APKP+KEGV+KADAEAAKKKLEEAGA
Sbjct: 60  VVLADFGANKVGVIKAVREITGLGLKEAKDLVDAAPKPLKEGVSKADAEAAKKKLEEAGA 119

Query: 121 KAELK 125
           KAE+K
Sbjct: 120 KAEIK 124


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.306    0.126    0.324 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 155,687
Number of extensions: 3604
Number of successful extensions: 17
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 125
Length of database: 1,221,021
Length adjustment: 73
Effective length of query: 52
Effective length of database: 951,140
Effective search space: 49459280
Effective search space used: 49459280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 124 (52.4 bits)