BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0106.p
         (420 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982867|ref|YP_001351873.1| AmpG permease [Janthinobacteriu...   207   9e-55

>gi|152982867|ref|YP_001351873.1| AmpG permease [Janthinobacterium
           sp. Marseille]
          Length = 448

 Score =  207 bits (527), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 143/434 (32%), Positives = 228/434 (52%), Gaps = 21/434 (4%)

Query: 7   SWQQYLNRRMLICVFLGFTSGLPLFILLSLLQAWLAKSGLNVKTLGLFALVMFPYTWKFL 66
           +++ YL    L  + LGF++GLPL ++L  L  WL ++G++  T+G  + V   Y +K++
Sbjct: 16  TFKVYLETATLRMLLLGFSAGLPLMLVLGTLSFWLREAGIDRSTIGYLSWVGLAYAFKWM 75

Query: 67  WSPLMDRFHFGS----MGRRRGWMVFTQLLLFVAIGGMGMLDPLTDVSTIAFMASVVAFL 122
           W+PL+DR         MGRRR W++ +QL +   + GM M DP   +  + + A +VAF 
Sbjct: 76  WAPLVDRMPIPLLTRWMGRRRSWLLLSQLAIMAGLVGMAMNDPHIALQPVVWCALMVAFG 135

Query: 123 SASQDIAIDAYRREILPEAELGLGSAIHVNAYKLSGMVPGALSLVLADQMP--------- 173
           SA+QDI++DA+R E          +A +   Y+L+ +  GA  L +A +           
Sbjct: 136 SATQDISLDAFRIESADTDRQAALAASYQTGYRLAMIWAGAGVLWIAARAEIAGSGSYQP 195

Query: 174 --WPTVFWITAAFMLPGLLCSLVVKEPKVYGSPP-KN----LYEAVVLPFREFIARGGWR 226
             W   +   AA ML G++  L   EP     PP KN    L + ++ PFREFI R  W+
Sbjct: 196 GAWRVAYLAMAASMLVGVITVLFSAEPARRILPPAKNVAAWLDDVLIGPFREFIVRYRWQ 255

Query: 227 NALWVLGFIFLYKLGDSMATALATKFYIDLGFSMTEIGVVSKTTSLWASVAGGIIGGIWM 286
            AL +L  I  Y++ D +   +A  FY+D+G+S  E+  V+K   +  ++ G  IGG   
Sbjct: 256 -ALLILALIATYRISDVVMGIMANPFYVDMGYSKDEVAAVTKIFGIIMTLVGAFIGGALS 314

Query: 287 VRLGINRGLWVFGVLQAIPILGFAWLAHVGTSLPVLATVIGLEAFGVGLGTTAFVAYIMR 346
           +R G+ R L +  +L +   L F WLA  G  +  L  VI  +    G+ + AF+AY+  
Sbjct: 315 MRFGMMRILALGAILSSASNLLFVWLAGHGHDVQALVLVISADNLASGIASAAFIAYLSS 374

Query: 347 ETDPRYTATQFALFTSLMAVPRTFVNSSVGYIVAETGWLNFFLICFVLALPGMLMLPRIA 406
            T+  Y+ATQ+ALF+S+M +   F+    G  V   G+ +FF    +L LP +++L   A
Sbjct: 375 LTNISYSATQYALFSSMMLLLPKFIAGYSGAYVDSFGYASFFTGTALLGLPVIVLLWFAA 434

Query: 407 PWNEKPVESQTQKA 420
               K V + TQ +
Sbjct: 435 RTVPKNVAAPTQDS 448


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.328    0.141    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,021,885
Number of extensions: 43218
Number of successful extensions: 206
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 334
Effective length of database: 903,079
Effective search space: 301628386
Effective search space used: 301628386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)