BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0103.p (596 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981209|ref|YP_001351865.1| phosphoenolpyruvate-protein pho... 887 0.0 gi|152980641|ref|YP_001353731.1| phosphoenolpyruvate synthase [J... 86 8e-18 >gi|152981209|ref|YP_001351865.1| phosphoenolpyruvate-protein phosphotransferase [Janthinobacterium sp. Marseille] Length = 582 Score = 887 bits (2291), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/582 (76%), Positives = 505/582 (86%), Gaps = 2/582 (0%) Query: 1 MASFSLHGIAVSQGIAIGRAHLMAPAALDVKHYLIAAPQVEAEVARLKSAVKAVHQELHT 60 M SF+LHGI VS+GIAIGRAHL+APAALDV+HYLIA QVEAEV+RL+SA+ AVH EL Sbjct: 1 MTSFTLHGIPVSRGIAIGRAHLLAPAALDVQHYLIADDQVEAEVSRLQSAIAAVHAELQA 60 Query: 61 IRTELPKDAPPELGAFIDVHSLILSDPLLAEVPQDIIRHRYYNAEWALVTQIEELSAQFD 120 I ELP+DAP ELGAFIDVH+LILSDP+++E+P DIIR RYYNAEWALVTQIEELSAQF+ Sbjct: 61 IWNELPQDAPAELGAFIDVHALILSDPMISEMPLDIIRSRYYNAEWALVTQIEELSAQFE 120 Query: 121 DIEDPYLRERKADIQQVGERILKVLTGSAGHLPPT--GEAAANIIVVAHDISPADMLQFR 178 +IEDPYLRER+ADIQQVGER+LKVLTGSA LP E A++IVVAHDISPADMLQFR Sbjct: 121 EIEDPYLRERRADIQQVGERVLKVLTGSANLLPKVDGSEGNASMIVVAHDISPADMLQFR 180 Query: 179 ESAFAGFVTDLGGPNSHTAIVARSLAIPAAVGMHNASVLVKHDDVLIIDGDAGVVIVDPS 238 AF GF+TD+GG NSHTAIVARSL IPA VG+ NAS L+ D LIIDGDAGVV+VDP+ Sbjct: 181 NRAFNGFITDVGGQNSHTAIVARSLDIPATVGVSNASELIVQGDWLIIDGDAGVVVVDPT 240 Query: 239 PLVLAQYRARQERLLRERKKLSRLKKTPAITQDGEPITLLANIELPNDAAPAFEAGAMGI 298 P+VL QYR +Q R +R+RKKL +LKKTP++T DG PITLLANIE P+D A A +AGA GI Sbjct: 241 PVVLDQYREKQARQVRDRKKLGKLKKTPSLTLDGTPITLLANIEFPDDCAHAMDAGAHGI 300 Query: 299 GLFRSEFLFMGRAGHLEKFPSEDEQFESYKQAVIAMKGRVVTIRTLDVGADKPLDADEET 358 GLFRSEFLFMGR GH K PSEDEQFESYK+AVIAMKGR VTIRTLD+GADKPLD E+T Sbjct: 301 GLFRSEFLFMGRTGHANKLPSEDEQFESYKRAVIAMKGRPVTIRTLDIGADKPLDFAEQT 360 Query: 359 ALNPALGLRAIRYCLSEPQMFLTQLRAILRASAYGPIKLLVPMMAHAFEIDQTLSMIEQA 418 ALNPALGLRAIR+CLSEPQMFLTQLRAILRASA+GP+KLLVPM+AHAFEIDQTL MIEQA Sbjct: 361 ALNPALGLRAIRFCLSEPQMFLTQLRAILRASAFGPVKLLVPMLAHAFEIDQTLLMIEQA 420 Query: 419 KQQLRDRKQKFDEDIPIGAMIEIPAAALALPLFIKRLDFLSIGTNDLIQYTLAIDRVDHE 478 K QLR+ K KFD +P+GAMIEIPAAAL LPLFIKR+DFLS+GTNDLIQYTLAIDRVDHE Sbjct: 421 KAQLREEKIKFDPVLPVGAMIEIPAAALTLPLFIKRMDFLSLGTNDLIQYTLAIDRVDHE 480 Query: 479 VAHLYDPLHPAVLFLLSTVISQGRKAGIPVSVCGEMAGDLKWTRLLLGMGLLEFSMHPSQ 538 VAHLY+PLHPAVL+LLS+ I+ KAG+P+SVCGEMAGD+ TRLLLGMGL EFSMHPSQ Sbjct: 481 VAHLYNPLHPAVLYLLSSTIAIAAKAGVPISVCGEMAGDINMTRLLLGMGLREFSMHPSQ 540 Query: 539 ILSVKNEILNSDLRLLEPQVKKVLRATEPAAINAAMAQLQAL 580 +LSVKNEILNSDL +LEP +K+ R EP AIN A+ +L+ L Sbjct: 541 LLSVKNEILNSDLTVLEPVTRKIARIFEPKAINEAVEKLRTL 582 >gi|152980641|ref|YP_001353731.1| phosphoenolpyruvate synthase [Janthinobacterium sp. Marseille] Length = 812 Score = 85.5 bits (210), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 101/403 (25%), Positives = 170/403 (42%), Gaps = 79/403 (19%) Query: 186 VTDLGGPNSHTAIVARSLAIPAAVGMHNASVLVKHDDVLII---DGDAGVVIVDPSPLVL 242 VT+ GG H AI+AR L +PA VG +A+ L+ ++ + +GD G V Sbjct: 431 VTNRGGRTCHAAIIARELGVPAVVGCGDATELLTDGTLVTVSCAEGDEGKV--------- 481 Query: 243 AQYRARQERLLRE--RKKLSRLKKTPAITQDGEPITLLANIELPNDAAPAFEAGAMGIGL 300 Y E + E R L L P+ + N+ P A G+GL Sbjct: 482 --YDGLLETEVTEFARGDLPEL-----------PLKITLNVGNPQLAFDFQSIPNAGVGL 528 Query: 301 FRSEFLFMGRAG----HLEKFPSEDEQFESYKQAV------------------IAMKG-- 336 R EF+ G + ++P D ++ ++V IA G Sbjct: 529 ARLEFIINNNIGVHPKAILEYPHIDADLKTAVESVARGHASPKAFYIDKLAEGIATIGAA 588 Query: 337 ---RVVTIRTLDVGADK--------PLDADEETALNPALGLRAI-RYCLSE-PQMFLTQL 383 + V +R D +++ + DEE NP LG R + RY + + F + Sbjct: 589 FWPKPVIVRLSDFKSNEYKKLIGGSRYEPDEE---NPMLGFRGVARYLAPDFAESFEMEC 645 Query: 384 RAILRAS---AYGPIKLLVPMMAHAFEIDQTLSMIEQAKQQLRDRKQKFDEDIPIGAMIE 440 +A+ R ++++VP + + ++ + ++ AK L+ + + + I M E Sbjct: 646 KAMKRVRDEMGLTNVEIMVPFVRTLGQAEKVIDLL--AKNGLK----RGENGLRIVMMCE 699 Query: 441 IPAAALALPLFIKRLDFLSIGTNDLIQYTLAIDRVD--HEVAHLYDPLHPAVLFLLSTVI 498 +P+ A+ F+ D SIG+NDL Q TL +DR +A +D PAVL + S I Sbjct: 700 VPSNAILAEEFLNYFDGFSIGSNDLTQLTLGLDRDSGMEILAADFDERDPAVLAMFSRAI 759 Query: 499 SQGRKAGIPVSVCGEMAGDL-KWTRLLLGMGLLEFSMHPSQIL 540 + RK G V +CG+ D + L+ G+ S++P ++ Sbjct: 760 AACRKQGKYVGICGQGPSDHPDFAEWLMKEGITSLSLNPDSVI 802 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.136 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,260,801 Number of extensions: 51601 Number of successful extensions: 156 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 2 Length of query: 596 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 507 Effective length of database: 891,988 Effective search space: 452237916 Effective search space used: 452237916 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)