BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0102.p
         (89 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983159|ref|YP_001351864.1| sugar transport PTS system phos...   148   7e-38

>gi|152983159|ref|YP_001351864.1| sugar transport PTS system
          phosphocarrier protein HPr [Janthinobacterium sp.
          Marseille]
          Length = 89

 Score =  148 bits (373), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 70/89 (78%), Positives = 81/89 (91%)

Query: 1  MIQKELEIVNKLGLHARASAKFTQLAGKFKSEVWLTFNKRRVNAKSIMGVMMLAAGKGSL 60
          MI++E+EI+NKLGLHARASAK TQLA K+KSEVW+T NKRRVNAKSIMGVMMLAAGKG+ 
Sbjct: 1  MIEQEIEIINKLGLHARASAKLTQLAAKYKSEVWMTRNKRRVNAKSIMGVMMLAAGKGAK 60

Query: 61 VTLETNGADEQECFTALEALIADKFGEGQ 89
          VTLET+G DE+ECF ALE LI +KFGEG+
Sbjct: 61 VTLETDGPDEKECFDALELLIQNKFGEGE 89


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.131    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 188,428
Number of extensions: 6059
Number of successful extensions: 19
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 89
Length of database: 1,221,021
Length adjustment: 59
Effective length of query: 30
Effective length of database: 1,002,898
Effective search space: 30086940
Effective search space used: 30086940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 122 (51.6 bits)